Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G400200.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 68.34 | 79.02 |
TraesCS2D01G379300.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 70.27 | 70.82 |
TraesCS2A01G383000.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 68.73 | 68.73 |
EES11679 | Sorghum | plastid | 57.92 | 65.5 |
Zm00001d001779_P001 | Maize | extracellular | 56.37 | 64.04 |
HORVU7Hr1G078490.1 | Barley | cytosol, plasma membrane, plastid, vacuole | 50.58 | 59.01 |
VIT_06s0080g00840.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 40.15 | 51.74 |
GSMUA_Achr8P07780_001 | Banana | plasma membrane | 39.77 | 50.0 |
VIT_08s0007g02880.t01 | Wine grape | cytosol, plasma membrane, vacuole | 39.38 | 48.8 |
GSMUA_Achr3P22600_001 | Banana | cytosol, plasma membrane, vacuole | 39.0 | 44.69 |
Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 35.14 | 43.33 |
PGSC0003DMT400015067 | Potato | plasma membrane | 34.36 | 42.18 |
KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 30.89 | 36.7 |
KRH26660 | Soybean | cytosol, plasma membrane, plastid | 30.89 | 36.7 |
KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 29.34 | 35.19 |
HORVU7Hr1G038470.2 | Barley | endoplasmic reticulum, plasma membrane, plastid, vacuole | 29.73 | 31.43 |
Protein Annotations
EnsemblPlants:HORVU2Hr1G089180.1 | EnsemblPlantsGene:HORVU2Hr1G089180 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 |
GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | ncoils:Coil | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF215 |
PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000B47CCD0 | UniProt:A0A287IVB4 |
MapMan:35.1 | : | : | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287IVB4]
Coordinates
chrchr2H:+:637283734..637284932
Molecular Weight (calculated)
27287.5 Da
IEP (calculated)
9.441
GRAVY (calculated)
0.619
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: PVPPETNQIK TSASHLINPI NPPPSLLLLT PSPNMSTSEA ATVIPVYDVA PGQGAPSKAP AAAPSAPPAA APAAAATTAP RKFPMPFFQR SDRGSRCMAF
101: LDFLLRIAAF GPALAAAIAT GTSDETLSVF TEFFQFRARF DDFPAFLFLM VASAIAAGYL LLSLPFSAVV VLRPQTTVLR LLLLVCDTIM LGLLTAAGAA
201: AAAIVDLAHS GNERANWVPI CMQFHGFCRR TSGAVVASFL SVFIFVLLVI LAAFSIRKR
101: LDFLLRIAAF GPALAAAIAT GTSDETLSVF TEFFQFRARF DDFPAFLFLM VASAIAAGYL LLSLPFSAVV VLRPQTTVLR LLLLVCDTIM LGLLTAAGAA
201: AAAIVDLAHS GNERANWVPI CMQFHGFCRR TSGAVVASFL SVFIFVLLVI LAAFSIRKR
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.