Factsheet for Zm00001d001779_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11679	Sorghum	plastid	76.32	75.98
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	70.61	71.88
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	71.49	63.42
HORVU2Hr1G089180.1	Barley	plastid	64.04	56.37
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	63.6	55.98
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	54.39	55.86
GSMUA_Achr8P07780_001	Banana	plasma membrane	48.25	53.4
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	44.74	50.75
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	48.68	49.12
Zm00001d044816_P001	Maize	cytosol, plasma membrane, vacuole	37.28	45.7
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	41.67	45.45
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	40.79	44.29
PGSC0003DMT400015067	Potato	plasma membrane	40.79	44.08
Zm00001d018029_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	38.16	43.07
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	40.35	42.2
Zm00001d025613_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	35.53	42.19
Zm00001d003418_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	35.53	41.97
KRH26660	Soybean	cytosol, plasma membrane, plastid	39.47	41.28
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	35.09	37.04

Protein Annotations

EntrezGene:100285037	MapMan:35.1	UniProt:A0A1R3MTP1	UniProt:B6U045	InterPro:CASP/CASPL	InterPro:CASP_dom
EMBL:EU970610	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0071555	ProteinID:ONM11930.1	PFAM:PF04535
PANTHER:PTHR11615	PANTHER:PTHR11615:SF215	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI000182FBF1	EnsemblPlantsGene:Zm00001d001779
EnsemblPlants:Zm00001d001779_P001	EnsemblPlants:Zm00001d001779_T001	SEG:seg	:	:	:

Description

Casparian strip membrane protein 4

Coordinates

chr2:-:707483..708601

Molecular Weight (calculated)

23990.6 Da

IEP (calculated)

9.614

GRAVY (calculated)

0.777

Length

228 amino acids

Sequence
(BLAST)

001: MSTSDAAATV IPIDDVPRQH GKAPAVDTVT AAPPPLAAAA PPAATTAPRK TRVPFFRRAD RGSRCVALLD LVLRVAAFGP ALAAAIATGT SDETLSVFTQ
101: FFQFHARFDD FPALLFFMVA NAIAAGYLVL SLPFSAVVVL RPQAIGLRHL LLICDLIIAA LLTAAAAAAA AIVDLAHSGN QRANWVPICM QFHGFCQRTS
201: GAVVASFLAV LVLLFLVILA AFTIRKRC

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.