Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044816_P001 | Maize | cytosol, plasma membrane, vacuole | 67.33 | 73.12 |
| Os02t0743900-00 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 71.29 | 71.64 |
| Zm00001d025613_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.84 | 69.27 |
| Zm00001d003418_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.84 | 68.91 |
| Zm00001d001779_P001 | Maize | extracellular | 43.07 | 38.16 |
| Zm00001d052757_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 38.61 | 35.14 |
Protein Annotations
| EnsemblPlants:Zm00001d018029_P001 | EnsemblPlants:Zm00001d018029_T001 | EnsemblPlantsGene:Zm00001d018029 | EntrezGene:103627719 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF141 | PFAM:PF04535 | ProteinID:AQK74852.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002210B40 | UniProt:A0A1D6HK94 | MapMan:35.1 | : | : | : |
Description
Casparian strip membrane protein 5
Coordinates
chr5:-:212390087..212391281
Molecular Weight (calculated)
21120.1 Da
IEP (calculated)
10.371
GRAVY (calculated)
0.856
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSKAPVSE HGGETSKAAV LVGVAAGSGG RRGRAATRVL AVVDLILRSV AVVATVGSAI AMGTTNQTLP FFTQFLRFKA QYSDLPTLTF FVVVNSIVAA
101: YLVLSIPLSI VHIMASSAKY SRLVLVFFDA AMLLALVTAA ASAAAAIVYL AHKGNARANW LAICQQFDSF CERISGSLIG SFAAMALLLL LILLSAAALA
201: RR
101: YLVLSIPLSI VHIMASSAKY SRLVLVFFDA AMLLALVTAA ASAAAAIVYL AHKGNARANW LAICQQFDSF CERISGSLIG SFAAMALLLL LILLSAAALA
201: RR
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.