Factsheet for Zm00001d052757_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

endoplasmic reticulum 1
mitochondrion 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	endoplasmic reticulum, mitochondrion, plasma membrane
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13180	Sorghum	plastid	77.03	72.77
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	66.22	66.22
TraesCS7A01G327900.1	Wheat	plasma membrane	66.22	65.92
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.77	65.77
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.32	65.61
Zm00001d001779_P001	Maize	extracellular	55.86	54.39
GSMUA_Achr8P07780_001	Banana	plasma membrane	45.05	48.54
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	40.99	47.64
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	44.59	47.37
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	40.99	45.27
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	41.89	44.29
Zm00001d025613_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	37.84	43.75
Zm00001d044816_P001	Maize	cytosol, plasma membrane, vacuole	36.49	43.55
Zm00001d003418_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	37.39	43.01
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	43.69	42.92
PGSC0003DMT400015067	Potato	plasma membrane	40.54	42.65
Zm00001d018029_P001	Maize	endoplasmic reticulum, plasma membrane, plastid, vacuole	35.14	38.61
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	37.84	38.53
KRH26660	Soybean	cytosol, plasma membrane, plastid	36.49	37.16
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	35.59	36.57

Protein Annotations

EnsemblPlants:Zm00001d052757_P001	EnsemblPlants:Zm00001d052757_T001	EnsemblPlantsGene:Zm00001d052757	EntrezGene:103654442	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF215	PFAM:PF04535	ProteinID:AQK58009.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0002217EFE	UniProt:K7V2Y9	MapMan:35.1	:	:	:

Description

Casparian strip membrane protein 4

Coordinates

chr4:+:199896932..199897600

Molecular Weight (calculated)

22996.5 Da

IEP (calculated)

9.954

GRAVY (calculated)

0.842

Length

222 amino acids

Sequence
(BLAST)

001: MTSESATATV IQMDDGRAPV VAAPAPAQAL GAAPRKTTTG LPFLLRSGAK GFRCCLAVVD LLLRLAALGT TLAAAISTGT ADERLSVFTT TFQFHARFDD
101: FPAFTSLLVA NAVAAGYLVL SLPFSVVGIV RPSKAATGVG LLLLLVCDVV VMALLTASGA AAAAIVYVAH SGNRRANWVP ICMQFHGFCQ RTSGSVVATF
201: LAVLIFVVLV LMAACAIRRR PS

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.