Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G078490.1 | Barley | cytosol, plasma membrane, plastid, vacuole | 96.4 | 96.4 |
| TraesCS7D01G324700.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 95.05 | 95.48 |
| TraesCS7A01G327900.1 | Wheat | plasma membrane | 95.05 | 94.62 |
| Zm00001d052757_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 65.77 | 65.77 |
| EES13180 | Sorghum | plastid | 65.77 | 62.13 |
| TraesCS2B01G400200.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 59.01 | 58.48 |
| Os08t0101900-00 | Rice | cytosol, peroxisome, vacuole | 47.75 | 55.5 |
| GSMUA_Achr8P07780_001 | Banana | plasma membrane | 50.0 | 53.88 |
| VIT_06s0080g00840.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 48.2 | 53.23 |
| TraesCS7B01G094200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 41.44 | 50.27 |
| GSMUA_Achr3P22600_001 | Banana | cytosol, plasma membrane, vacuole | 50.9 | 50.0 |
| VIT_08s0007g02880.t01 | Wine grape | cytosol, plasma membrane, vacuole | 46.85 | 49.76 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 46.4 | 49.05 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 45.95 | 48.34 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 41.44 | 42.2 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 40.54 | 41.28 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 37.39 | 38.43 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G228600.1 | EnsemblPlantsGene:TraesCS7B01G228600 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF215 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7B:-:428920996..428921664
Molecular Weight (calculated)
23613.0 Da
IEP (calculated)
9.504
GRAVY (calculated)
0.664
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTNEATVI HMDDTTSKAP AMAAPPSGAA TAPVQQQQRK SGGGVPFILR SGAEGFRRCM AFVDLLLRVV AFGPTLAAAI STGTSDETLS VFTEFFQFRA
101: RFDDFPAFTF FMVANAVAAG YLVLSLPFSI VGIIRPKATG VRLLLLVCDT VMVVLVTAAA SAAAAIVYVA HEGSRRANWV PICMQFHGFC QRTSGAVVAS
201: FLAVLVFILL VLLSACAIRR QR
101: RFDDFPAFTF FMVANAVAAG YLVLSLPFSI VGIIRPKATG VRLLLLVCDT VMVVLVTAAA SAAAAIVYVA HEGSRRANWV PICMQFHGFC QRTSGAVVAS
201: FLAVLVFILL VLLSACAIRR QR
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.