Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G379300.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 91.96 | 80.16 |
| Zm00001d001779_P001 | Maize | extracellular | 71.88 | 70.61 |
| TraesCS2A01G383000.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 81.25 | 70.27 |
| HORVU2Hr1G089180.1 | Barley | plastid | 79.02 | 68.34 |
| EES11679 | Sorghum | plastid | 66.52 | 65.07 |
| TraesCS7B01G228600.1 | Wheat | cytosol, plasma membrane, plastid, vacuole | 58.48 | 59.01 |
| VIT_06s0080g00840.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 44.64 | 49.75 |
| GSMUA_Achr8P07780_001 | Banana | plasma membrane | 45.54 | 49.51 |
| VIT_08s0007g02880.t01 | Wine grape | cytosol, plasma membrane, vacuole | 44.64 | 47.85 |
| GSMUA_Achr3P22600_001 | Banana | cytosol, plasma membrane, vacuole | 45.54 | 45.13 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 40.62 | 43.33 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 40.18 | 42.65 |
| TraesCS7B01G094200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 34.38 | 42.08 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 36.61 | 37.61 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 36.61 | 37.61 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 33.48 | 34.72 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G400200.1 | EnsemblPlantsGene:TraesCS2B01G400200 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF215 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:+:568634784..568635626
Molecular Weight (calculated)
23747.3 Da
IEP (calculated)
10.313
GRAVY (calculated)
0.738
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSEAATVI PVYDVAPGQG APSKAPAAAA VPPAAAPAAP PTTAPRKFPM RFFRRSDRGS RCMAFLDFLL RIAAFGPALA AAIATGTSDE TLSVFTEFFQ
101: FRARFDDFPA FLFLMVASAI AAGYLLLSLP FSAVVVLRPQ TTVLRLLLLV CDTIMLGLLT AGAAAAAAIV DLAHSGNERA NWVPICMQFH GFCRRTSGAV
201: VASFLSVFIF VLLVVLAAFS IRKR
101: FRARFDDFPA FLFLMVASAI AAGYLLLSLP FSAVVVLRPQ TTVLRLLLLV CDTIMLGLLT AGAAAAAAIV DLAHSGNERA NWVPICMQFH GFCRRTSGAV
201: VASFLSVFIF VLLVVLAAFS IRKR
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.