CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001779_P001	Maize	extracellular	75.98	76.32
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.07	66.52
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	65.07	57.98
HORVU2Hr1G089180.1	Barley	plastid	65.5	57.92
EES13180	Sorghum	plastid	58.52	57.02
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	62.88	55.6
GSMUA_Achr8P07780_001	Banana	plasma membrane	46.29	51.46
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	43.23	49.25
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	47.16	47.79
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	42.36	46.41
EES10944	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	37.55	44.79
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	38.86	42.38
PGSC0003DMT400015067	Potato	plasma membrane	38.43	41.71
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	39.3	41.28
KXG19653	Sorghum	cytosol, plasma membrane, vacuole	37.55	40.57
KRH26660	Soybean	cytosol, plasma membrane, plastid	38.43	40.37
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	35.37	37.5

Protein Annotations

MapMan:35.1	EntrezGene:8076491	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlants:EES11679	ProteinID:EES11679
ProteinID:EES11679.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0051536
GO:GO:0071555	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF215	EnsemblPlantsGene:SORBI_3006G273300	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0001A8704B	RefSeq:XP_002447351.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:60494042..60495294

Molecular Weight (calculated)

23798.3 Da

IEP (calculated)

9.572

GRAVY (calculated)

0.837

Length

229 amino acids

Sequence
(BLAST)

001: MSTSEAGAAA TVIPIDDVAR DHGKAPAVAT APPPPAAAAA VPAAATTTAP RKTGVPFFRR ADRGSRCVAL LDFVLRVAAF GPALAAAIAT GTSDETLSVF
101: TQFFQFHARF DDFPALLFFM VANAIAAGYL VLSLPFSAVI VLRPQAIGLR HLLLVCDMII AALLTAAAAA AAAIVDLAHS GNLRANWVPI CMQFHGFCQR
201: TSGAVVGSFL AVLVLLFLVI LAAFAIRKR

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.