Factsheet for GSMUA_Achr3P22600_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07780_001	Banana	plasma membrane	65.04	71.36
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	54.87	59.33
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	51.33	57.71
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	51.33	52.49
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	51.33	52.25
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	50.0	50.9
TraesCS7A01G327900.1	Wheat	plasma membrane	50.0	50.67
PGSC0003DMT400015067	Potato	plasma membrane	46.9	50.24
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	46.02	49.52
Zm00001d001779_P001	Maize	extracellular	49.12	48.68
EES11679	Sorghum	plastid	47.79	47.16
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	44.69	46.33
TraesCS2B01G400200.1	Wheat	cytosol, plasma membrane, plastid, vacuole	45.13	45.54
KRH26660	Soybean	cytosol, plasma membrane, plastid	43.81	45.41
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	37.17	43.98
EES13180	Sorghum	plastid	45.58	43.83
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	42.92	43.69
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	40.71	42.59
TraesCS2A01G383000.1	Wheat	cytosol, plasma membrane, plastid, vacuole	44.69	39.0
HORVU2Hr1G089180.1	Barley	plastid	44.69	39.0
TraesCS2D01G379300.1	Wheat	cytosol, plasma membrane, plastid, vacuole	44.25	38.91

Protein Annotations

EnsemblPlants:GSMUA_Achr3P22600_001	EnsemblPlants:GSMUA_Achr3T22600_001	EnsemblPlantsGene:GSMUA_Achr3G22600_001	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002958981	UniProt:M0SGX6
MapMan:35.1	:	:	:	:	:

Description

UPF0497 membrane protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22600_001]

Coordinates

chr3:-:23518295..23519303

Molecular Weight (calculated)

23656.2 Da

IEP (calculated)

9.075

GRAVY (calculated)

0.733

Length

226 amino acids

Sequence
(BLAST)

001: MSTSEAAPSA TAITIDDSDA RGKAPAAAPA PAAPPPAAPA APKDRRFPFL LRKTKAAGGG CKRGVACFDF LLRLCAIAAT LVAAIMMGTT DETLPFFTQF
101: FQFHANFADL PALTFFVVGN AIAAGYLVLS LPFSLAAMIR PQAIGPRLLL FVLDTVMMEL TIAAASSATA IVYLAHNGSS KANWVAICLR FDGFCQSISG
201: AVVASFIAVV FFMALVVMSA LVMRKQ

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.