CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052757_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	72.77	77.03
HORVU7Hr1G078490.1	Barley	cytosol, plasma membrane, plastid, vacuole	62.55	66.22
TraesCS7D01G324700.1	Wheat	cytosol, plasma membrane, plastid, vacuole	62.13	66.06
TraesCS7B01G228600.1	Wheat	cytosol, plasma membrane, plastid, vacuole	62.13	65.77
TraesCS7A01G327900.1	Wheat	plasma membrane	62.13	65.47
EES11679	Sorghum	plastid	57.02	58.52
Os08t0101900-00	Rice	cytosol, peroxisome, vacuole	42.55	52.36
GSMUA_Achr8P07780_001	Banana	plasma membrane	43.83	50.0
VIT_06s0080g00840.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	40.85	47.76
VIT_08s0007g02880.t01	Wine grape	cytosol, plasma membrane, vacuole	41.28	46.41
GSMUA_Achr3P22600_001	Banana	cytosol, plasma membrane, vacuole	43.83	45.58
Solyc06g074230.2.1	Tomato	cytosol, plasma membrane, plastid, vacuole	40.0	44.76
EES10944	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	36.17	44.27
PGSC0003DMT400015067	Potato	plasma membrane	39.15	43.6
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	37.87	40.83
KRH26660	Soybean	cytosol, plasma membrane, plastid	37.87	40.83
KXG19653	Sorghum	cytosol, plasma membrane, vacuole	35.32	39.15
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	34.04	37.04

Protein Annotations

MapMan:35.1	EntrezGene:8064316	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlants:EES13180	ProteinID:EES13180
ProteinID:EES13180.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0051536
GO:GO:0071555	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF215	EnsemblPlantsGene:SORBI_3007G001300	unigene:Sbi.8794
TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0001A876B1	RefSeq:XP_002443685.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:122906..123851

Molecular Weight (calculated)

24505.1 Da

IEP (calculated)

9.798

GRAVY (calculated)

0.780

Length

235 amino acids

Sequence
(BLAST)

001: MTSESATVIQ MDDGRAPAPA AAGAAAAAAA SSSYATAPTS ISAAEPAAAP RKTTTVPFLL RSGAEGFRRC LAVIDFLLRV AAFGPTLAAA ISTGTADERL
101: SVFTNFFQFH ARFDDFPAFT FFLVANAVAA GYLVLSLPFS VVVILRPNKA TGGVRLLLLL CDVLIMALLT AAGAAAAAIV YVAHSGNRRA NWVPICMQFH
201: GFCQRTSGSV VATFLAVLVF IVLILMAACV IRRSK

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.