CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003418_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	93.23	92.75
Zm00001d025613_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	91.67	91.67
Os04t0460400-00	Rice	peroxisome, plasma membrane	83.85	87.5
KXG19653	Sorghum	cytosol, plasma membrane, vacuole	68.75	62.26
EES11679	Sorghum	plastid	44.79	37.55
EES13180	Sorghum	plastid	44.27	36.17

Protein Annotations

MapMan:35.1	EntrezGene:8073432	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlants:EES10944	ProteinID:EES10944
ProteinID:EES10944.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0051536
GO:GO:0071555	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF141	EnsemblPlantsGene:SORBI_3006G106900	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0001A86E7D	RefSeq:XP_002446616.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47646123..47647316

Molecular Weight (calculated)

20736.7 Da

IEP (calculated)

9.263

GRAVY (calculated)

0.897

Length

192 amino acids

Sequence
(BLAST)

001: MTKDVVIEHG ESSKAPLVPA PVAAGVGRAV SIADVFLRFL SIVATIASAI SMGTTNETLP FFTQFIQFEA KYSDLPSFTF FVAANAVVCT YLVLSIPLSI
101: VHIIRPRARY SRLILVFFDA VMLALLTAGA SAAAAIVYLA HKGNVRANWF AICQQFDSFC ERISGSLIGS FAAMVLLIVL IFLSAFALAR RH

Best Arabidopsis Sequence Match ( AT5G15290.1 )
(BLAST)

001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH

Arabidopsis Description

CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.