Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | KRH09922 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | KRH23409 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | KRH56393 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | KRH62532 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72260 | Soybean | plasma membrane | 97.94 | 97.94 |
| KRH72258 | Soybean | plasma membrane | 90.21 | 90.21 |
| KRH32784 | Soybean | plasma membrane | 86.6 | 86.15 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 86.08 | 85.2 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 85.57 | 85.13 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 77.84 | 75.5 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 69.07 | 67.0 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 61.34 | 59.2 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 61.86 | 58.82 |
| Bra034831.1-P | Field mustard | cytosol, plasma membrane, vacuole | 59.79 | 57.71 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 59.28 | 56.93 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 59.28 | 56.37 |
| CDX75070 | Canola | plasma membrane | 59.79 | 56.04 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 58.25 | 55.39 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.73 | 54.9 |
| Bra041024.1-P | Field mustard | cytosol, plasma membrane, vacuole | 57.73 | 54.9 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 58.25 | 54.85 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 56.7 | 54.46 |
| Bra017259.1-P | Field mustard | plasma membrane | 56.7 | 54.46 |
| Bra001409.1-P | Field mustard | cytosol, plasma membrane, vacuole | 57.22 | 54.41 |
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 45.88 | 54.27 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 56.7 | 53.4 |
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 56.7 | 53.4 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 56.7 | 53.4 |
| CDX84159 | Canola | plasma membrane | 56.7 | 53.14 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 56.19 | 52.91 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 56.19 | 52.91 |
| CDY43749 | Canola | plasma membrane | 48.45 | 51.93 |
| Bra017260.1-P | Field mustard | plasma membrane | 48.45 | 51.93 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 56.7 | 50.46 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 56.19 | 50.0 |
| CDY00740 | Canola | plasma membrane | 36.6 | 43.56 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 48.45 | 43.52 |
| KRH70770 | Soybean | plasma membrane | 41.24 | 43.01 |
| KRH74901 | Soybean | cytosol, plasma membrane, vacuole | 20.1 | 42.86 |
| KRG89581 | Soybean | plasma membrane | 39.18 | 40.86 |
| KRG89579 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 38.66 | 40.32 |
| KRH74902 | Soybean | endoplasmic reticulum, extracellular | 13.92 | 38.57 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 2.06 | 2.17 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 2.06 | 2.17 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.06 | 2.16 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 2.06 | 2.16 |
Protein Annotations
| MapMan:35.1 | EMBL:ACUP02006165 | InterPro:CASP/CASPL | InterPro:CASP_dom | EnsemblPlantsGene:GLYMA_10G075400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0051536 | GO:GO:0071555 | UniProt:I1L9F8 |
| EnsemblPlants:KRH32782 | ProteinID:KRH32782 | ProteinID:KRH32782.1 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000233D379 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:+:7817920..7819816
Molecular Weight (calculated)
20419.0 Da
IEP (calculated)
8.222
GRAVY (calculated)
0.820
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTIDVPES SNVAKGKAVL VAPPRPGGWK KGVAIMDFIL RLGAIAAALG AAATMGTSDQ TLPFFTQFFQ FEASYDSFTS FQFFVITMAL VGGYLVLSLP
101: FSFVAIIRPH AAGPRLFLII LDTVFLTLTT ASGASAAAIV YLAHNGNQDS NWLAICNQFG DFCAQTSSAV VSSFVAVVVL VLLVVLSALA LGKR
101: FSFVAIIRPH AAGPRLFLII LDTVFLTLTT ASGASAAAIV YLAHNGNQDS NWLAICNQFG DFCAQTSSAV VSSFVAVVVL VLLVVLSALA LGKR
001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
Arabidopsis Description
CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.