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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62471 Canola cytosol, plasma membrane, vacuole 99.51 99.51
Bra001409.1-P Field mustard cytosol, plasma membrane, vacuole 91.67 91.67
Bra034831.1-P Field mustard cytosol, plasma membrane, vacuole 83.82 85.07
AT3G11550.1 Thale cress cytosol, plasma membrane, vacuole 84.8 84.8
Bra023049.1-P Field mustard cytosol, plasma membrane, vacuole 61.76 61.16
KRH72258 Soybean plasma membrane 57.84 60.82
Bra017259.1-P Field mustard plasma membrane 58.82 59.41
KRH32784 Soybean plasma membrane 55.39 57.95
KRH32782 Soybean cytosol, plasma membrane, vacuole 54.9 57.73
KRH72256 Soybean cytosol, plasma membrane, vacuole 56.37 57.5
KRH72260 Soybean plasma membrane 53.92 56.7
KRH72259 Soybean cytosol, plasma membrane, vacuole 53.92 56.41
Bra005299.1-P Field mustard peroxisome, plasma membrane, vacuole 44.61 55.49
KRH32783 Soybean cytosol, plasma membrane, vacuole 52.45 54.59
Bra017260.1-P Field mustard plasma membrane 48.04 54.14
KRH32785 Soybean cytosol, plasma membrane, vacuole 51.96 53.0
Bra005298.1-P Field mustard plasma membrane 48.53 51.56
Bra034349.1-P Field mustard plasma membrane 51.96 47.96
Bra000515.1-P Field mustard plasma membrane 50.49 46.61
Bra008708.1-P Field mustard plasma membrane 40.69 44.38
Bra006295.1-P Field mustard cytosol, plasma membrane, vacuole 38.73 42.25
Bra026853.1-P Field mustard plasma membrane 1.96 2.05
Protein Annotations
EnsemblPlants:Bra041024.1EnsemblPlants:Bra041024.1-PEnsemblPlantsGene:Bra041024GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF116
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI000253EBC7UniProt:M4FIU5
MapMan:35.1:::::
Description
AT3G11550 (E=3e-068) | integral membrane family protein
Coordinates
chrScaffold000386:-:10125..10926
Molecular Weight (calculated)
21737.5 Da
IEP (calculated)
6.233
GRAVY (calculated)
0.615
Length
204 amino acids
Sequence
(BLAST)
001: MKNESTVIDV PAESSSAMKG SAPLIGVARD HTTSDSGGYK RGLSIFDFLL RLAAIIAASV AAGTMFTSDE TLPFFTQFLQ CEAGYDDLPT FQFFVIAMSM
101: ISGYLLLSLP FSVVTIVRPL ATAPRLLLLV LDTAAMAFNM AAASSAAAIG YLAHNGNQNT NWLPICQQFG DFCQKTSGAV VSSFVSVVFF IMLVVLSGVA
201: LKRH
Best Arabidopsis Sequence Match ( AT3G11550.1 )
(BLAST)
001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
Arabidopsis Description
CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.