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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78624 Canola cytosol, plasma membrane, vacuole 97.86 97.86
AT5G15290.1 Thale cress cytosol, plasma membrane, vacuole 82.35 82.35
Bra008708.1-P Field mustard plasma membrane 82.35 82.35
Bra017259.1-P Field mustard plasma membrane 44.38 41.09
Bra023049.1-P Field mustard cytosol, plasma membrane, vacuole 44.38 40.29
Bra005299.1-P Field mustard peroxisome, plasma membrane, vacuole 35.29 40.24
Bra001409.1-P Field mustard cytosol, plasma membrane, vacuole 43.85 40.2
Bra034831.1-P Field mustard cytosol, plasma membrane, vacuole 42.25 39.3
Bra041024.1-P Field mustard cytosol, plasma membrane, vacuole 42.25 38.73
Bra000515.1-P Field mustard plasma membrane 44.92 38.01
Bra034349.1-P Field mustard plasma membrane 44.92 38.01
Bra017260.1-P Field mustard plasma membrane 35.83 37.02
Bra005298.1-P Field mustard plasma membrane 35.29 34.38
Bra026853.1-P Field mustard plasma membrane 1.6 1.54
Protein Annotations
EnsemblPlants:Bra006295.1EnsemblPlants:Bra006295.1-PEnsemblPlantsGene:Bra006295GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF81
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI000253FC14UniProt:M4CQ06
MapMan:35.1:::::
Description
AT5G15290 (E=5e-073) | integral membrane family protein
Coordinates
chrA03:+:2902511..2903273
Molecular Weight (calculated)
20526.5 Da
IEP (calculated)
9.945
GRAVY (calculated)
0.732
Length
187 amino acids
Sequence
(BLAST)
001: MKSGQAEIAE TSKGIKKRGL MSRKIAIFEF ILRIIAFFNT ISSAILMATT NETLPFFTQF IRFHADYNDL PALTFFVVAN AVVSGYLILT LPLAFVHIVK
101: NKTENSRILL IILDVAMVGL LASGAASAAD IVYLAHNGNN NTNWFAVCQQ FNSFCERISG SLIGSFIAVV LLILLIILSA IAISRRH
Best Arabidopsis Sequence Match ( AT5G15290.1 )
(BLAST)
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.