Factsheet for Bra005299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36100.1	Bra027174.1-P	AT3G16310.1	21798944
AT2G36100.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84159	Canola	plasma membrane	96.34	76.33
CDX75071	Canola	cytosol, plasma membrane, vacuole	87.8	69.9
Bra017260.1-P	Field mustard	plasma membrane	74.39	67.4
Bra017259.1-P	Field mustard	plasma membrane	79.88	64.85
AT2G36100.1	Thale cress	cytosol, plasma membrane, vacuole	79.27	63.11
Bra023049.1-P	Field mustard	cytosol, plasma membrane, vacuole	78.05	62.14
Bra005298.1-P	Field mustard	plasma membrane	58.54	50.0
Bra034831.1-P	Field mustard	cytosol, plasma membrane, vacuole	57.93	47.26
KRH72258	Soybean	plasma membrane	55.49	46.91
KRH72256	Soybean	cytosol, plasma membrane, vacuole	56.71	46.5
KRH32783	Soybean	cytosol, plasma membrane, vacuole	55.49	46.43
KRH32784	Soybean	plasma membrane	54.88	46.15
KRH72260	Soybean	plasma membrane	54.27	45.88
KRH32782	Soybean	cytosol, plasma membrane, vacuole	54.27	45.88
KRH72259	Soybean	cytosol, plasma membrane, vacuole	53.66	45.13
Bra041024.1-P	Field mustard	cytosol, plasma membrane, vacuole	55.49	44.61
Bra001409.1-P	Field mustard	cytosol, plasma membrane, vacuole	54.27	43.63
KRH32785	Soybean	cytosol, plasma membrane, vacuole	52.44	43.0
Bra006295.1-P	Field mustard	cytosol, plasma membrane, vacuole	40.24	35.29
Bra008708.1-P	Field mustard	plasma membrane	39.02	34.22
Bra034349.1-P	Field mustard	plasma membrane	45.12	33.48
Bra000515.1-P	Field mustard	plasma membrane	43.29	32.13
Bra026853.1-P	Field mustard	plasma membrane	3.66	3.08

Protein Annotations

EnsemblPlants:Bra005299.1	EnsemblPlants:Bra005299.1-P	EnsemblPlantsGene:Bra005299	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002547C76	UniProt:M4CM62
MapMan:35.1	:	:	:	:	:

Description

AT2G36100 (E=5e-037) | integral membrane family protein

Coordinates

chrA05:+:4624605..4625354

Molecular Weight (calculated)

17432.2 Da

IEP (calculated)

7.671

GRAVY (calculated)

0.627

Length

164 amino acids

Sequence
(BLAST)

001: MAKESTTIEV GEPSTVTKST SHVVVDEKKK KGFVAATAGG GYKRGLAIFD FLLRLAAIVT TITSSSVMYT AEETLPFFTQ FLQFQAGYDD FATFQFFVIA
101: IAMVASYLVL SLPFSIVTII RPLAAAPRLI LLISDTVVVT LATSAAAAAA AIVYLAHNGN PNTN

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.