Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 69.9 | 87.8 |
| CDX84159 | Canola | plasma membrane | 87.86 | 87.44 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 86.41 | 86.41 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 85.92 | 85.92 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 84.95 | 84.95 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 83.01 | 84.65 |
| CDX75070 | Canola | plasma membrane | 83.98 | 83.57 |
| CDY43749 | Canola | plasma membrane | 69.42 | 79.01 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 75.24 | 75.24 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 61.65 | 63.18 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 60.68 | 61.27 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 60.19 | 60.78 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 58.25 | 60.0 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.22 | 59.8 |
| KRH72258 | Soybean | plasma membrane | 56.31 | 59.79 |
| KRH32784 | Soybean | plasma membrane | 55.34 | 58.46 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 54.37 | 57.14 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 53.4 | 56.7 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 54.85 | 56.5 |
| KRH72260 | Soybean | plasma membrane | 52.91 | 56.19 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 55.9 |
| CDY00740 | Canola | plasma membrane | 38.35 | 48.47 |
| CDY69259 | Canola | extracellular, plasma membrane | 19.9 | 47.13 |
| CDY30551 | Canola | plasma membrane | 49.51 | 46.15 |
| CDX77114 | Canola | plasma membrane | 49.51 | 46.15 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 41.26 | 45.45 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 40.78 | 44.92 |
| CDY31172 | Canola | plasma membrane | 47.57 | 44.34 |
| CDX83261 | Canola | plasma membrane | 47.57 | 44.34 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.84 | 42.78 |
| CDY11718 | Canola | plasma membrane | 20.39 | 42.0 |
| CDY33770 | Canola | plasma membrane | 2.91 | 3.08 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.08 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.97 | 1.08 |
Protein Annotations
| EnsemblPlants:CDX75071 | EnsemblPlantsGene:GSBRNA2T00117105001 | GO:A0A078CDE6 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF116 | PFAM:PF04535 | ProteinID:CDX75071 | ProteinID:CDX75071.1 | SEG:seg | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0004EF2D4D | MapMan:35.1 | : | : | : |
Description
BnaA05g08170D
Coordinates
chrLK031802:+:2313173..2314050
Molecular Weight (calculated)
21918.8 Da
IEP (calculated)
7.505
GRAVY (calculated)
0.833
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIEV GEPSTVTKST SHVVVDEKKK GFVAATAGGG YKRGLAIFDF LLRLAAIVTT ITASSVMYTA EETLPFFTQF LQFQAGYDDF ATFQFFVIAI
101: AMVASYLVLS LPFSIVTVIR PLAVAPRLIL LISDTVAVTL ATSAAAAAAA IVYLAHNGNP NTNWLPICQQ FGDFCQAVSS AVVASSIAVV FFIILIVISA
201: IALKRH
101: AMVASYLVLS LPFSIVTVIR PLAVAPRLIL LISDTVAVTL ATSAAAAAAA IVYLAHNGNP NTNWLPICQQ FGDFCQAVSS AVVASSIAVV FFIILIVISA
201: IALKRH
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.