CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000515.1-P	Field mustard	plasma membrane	99.09	99.09
CDX83261	Canola	plasma membrane	99.09	99.09
CDX77114	Canola	plasma membrane	95.02	95.02
CDY30551	Canola	plasma membrane	95.02	95.02
AT2G27370.1	Thale cress	cytosol, peroxisome, plasma membrane	91.4	91.4
CDY08514	Canola	cytosol, plasma membrane, vacuole	46.61	51.24
CDY62471	Canola	cytosol, plasma membrane, vacuole	46.61	50.49
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.7	49.51
CDY01034	Canola	cytosol, plasma membrane, vacuole	45.7	49.51
CDX75070	Canola	plasma membrane	44.8	47.83
CDX75071	Canola	cytosol, plasma membrane, vacuole	44.34	47.57
CDX84158	Canola	cytosol, plasma membrane, vacuole	44.34	47.57
CDY43748	Canola	cytosol, plasma membrane, vacuole	43.44	47.52
CDX84159	Canola	plasma membrane	43.89	46.86
CDX84579	Canola	cytosol, plasma membrane, vacuole	43.44	46.6
CDX79653	Canola	cytosol, plasma membrane, vacuole	42.99	46.12
CDX70605	Canola	cytosol, plasma membrane, vacuole	38.91	45.99
CDX78624	Canola	cytosol, plasma membrane, vacuole	38.01	44.92
KRH74902	Soybean	endoplasmic reticulum, extracellular	14.03	44.29
CDY69259	Canola	extracellular, plasma membrane	17.19	43.68
CDY00740	Canola	plasma membrane	32.13	43.56
CDX69534	Canola	cytosol, plasma membrane, vacuole	36.2	42.78
CDY43749	Canola	plasma membrane	34.84	42.54
CDY11718	Canola	plasma membrane	18.55	41.0
KRH74901	Soybean	cytosol, plasma membrane, vacuole	15.84	38.46
CDY33770	Canola	plasma membrane	1.36	1.54

Protein Annotations

EnsemblPlants:CDY31172	EnsemblPlantsGene:GSBRNA2T00047266001	GO:A0A078H109	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116
PFAM:PF04535	ProteinID:CDY31172	ProteinID:CDY31172.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0004EED995	UniProt:A0A078H109	MapMan:35.1	:	:	:

Description

BnaC03g47190DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078H109]

Coordinates

chrLK032268:-:80367..81653

Molecular Weight (calculated)

23879.5 Da

IEP (calculated)

8.950

GRAVY (calculated)

0.426

Length

221 amino acids

Sequence
(BLAST)

001: MDIEKAGSRR EEEEPIVQKP KLDKGKGKAH VFAPPMNNSR IMEKHKQEKV SMPGWKRGVA IVDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFSAD
101: YTDLPTLSSF VVVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLVLCDTA MMGLTMIAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAAALLMVLV IFSAFALKRS T

Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)

001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T

Arabidopsis Description

CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.