Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 97.57 | 97.57 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 97.09 | 97.09 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 93.2 | 93.2 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 88.83 | 90.59 |
| CDX75070 | Canola | plasma membrane | 88.35 | 87.92 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 84.95 | 84.95 |
| CDX84159 | Canola | plasma membrane | 80.1 | 79.71 |
| CDY43749 | Canola | plasma membrane | 66.99 | 76.24 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 75.24 | 75.24 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 61.16 | 62.69 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 61.16 | 61.76 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 60.68 | 61.27 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.71 | 60.29 |
| KRH72258 | Soybean | plasma membrane | 56.31 | 59.79 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 56.8 | 58.5 |
| KRH32784 | Soybean | plasma membrane | 54.85 | 57.95 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 54.37 | 57.14 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 56.19 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 55.9 |
| KRH72260 | Soybean | plasma membrane | 51.94 | 55.15 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 54.5 |
| CDY00740 | Canola | plasma membrane | 40.29 | 50.92 |
| CDY69259 | Canola | extracellular, plasma membrane | 19.42 | 45.98 |
| CDY30551 | Canola | plasma membrane | 47.57 | 44.34 |
| CDX77114 | Canola | plasma membrane | 47.57 | 44.34 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 39.81 | 43.85 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 39.81 | 43.85 |
| CDY31172 | Canola | plasma membrane | 46.12 | 42.99 |
| CDX83261 | Canola | plasma membrane | 46.12 | 42.99 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.84 | 42.78 |
| CDY11718 | Canola | plasma membrane | 19.9 | 41.0 |
| CDY33770 | Canola | plasma membrane | 2.91 | 3.08 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.08 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.97 | 1.08 |
Protein Annotations
| EnsemblPlants:CDX79653 | EnsemblPlantsGene:GSBRNA2T00132445001 | GO:A0A078CWZ3 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | ProteinID:CDX79653 | ProteinID:CDX79653.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EEED7F | MapMan:35.1 | : | : | : | : |
Description
BnaC03g19890D
Coordinates
chrLK031818:-:1399097..1400337
Molecular Weight (calculated)
21972.9 Da
IEP (calculated)
7.507
GRAVY (calculated)
0.816
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDI GETSTVTKST SHALVDEKKK GFVTAAPGGG YKRGLTIFDF LLRLAAIGIT IGASSVMFTA EETLPFFTQF LQFQAGYDDF PTFQFFVIAI
101: AIVASYLVLS LPFSIVTIVR PLAVAPRLIL LISDTVVLTL TTAAAAAAAS IVYLAHNGNA NTNWLPICQQ FGDFCQTAST AVVAASISVV FFILLIVISA
201: IVLKRH
101: AIVASYLVLS LPFSIVTIVR PLAVAPRLIL LISDTVVLTL TTAAAAAAAS IVYLAHNGNA NTNWLPICQQ FGDFCQTAST AVVAASISVV FFILLIVISA
201: IVLKRH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.