Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017260.1-P | Field mustard | plasma membrane | 97.79 | 97.79 |
| CDX84159 | Canola | plasma membrane | 86.19 | 75.36 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 79.01 | 69.42 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 77.35 | 69.31 |
| CDX75070 | Canola | plasma membrane | 79.01 | 69.08 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 78.45 | 68.93 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 77.35 | 67.96 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 76.24 | 66.99 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 75.69 | 66.5 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 56.91 | 51.24 |
| KRH72258 | Soybean | plasma membrane | 53.59 | 50.0 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 55.25 | 49.02 |
| KRH32784 | Soybean | plasma membrane | 52.49 | 48.72 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 54.7 | 48.53 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 51.93 | 48.45 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 51.93 | 47.96 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 52.49 | 47.5 |
| KRH72260 | Soybean | plasma membrane | 50.28 | 46.91 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 50.28 | 46.67 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 52.49 | 46.57 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 49.17 | 44.5 |
| CDY69259 | Canola | extracellular, plasma membrane | 19.34 | 40.23 |
| CDY30551 | Canola | plasma membrane | 44.2 | 36.2 |
| CDX77114 | Canola | plasma membrane | 44.2 | 36.2 |
| CDY00740 | Canola | plasma membrane | 32.6 | 36.2 |
| CDY11718 | Canola | plasma membrane | 19.34 | 35.0 |
| CDY31172 | Canola | plasma membrane | 42.54 | 34.84 |
| CDX83261 | Canola | plasma membrane | 42.54 | 34.84 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 35.91 | 34.76 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 35.91 | 34.76 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 34.25 | 33.16 |
| CDY33770 | Canola | plasma membrane | 2.76 | 2.56 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.55 | 0.54 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.55 | 0.54 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.55 | 0.54 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.55 | 0.54 |
Protein Annotations
| EnsemblPlants:CDY43749 | EnsemblPlantsGene:GSBRNA2T00077243001 | GO:A0A078I2C6 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | ProteinID:CDY43749 | ProteinID:CDY43749.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EE92B4 | UniProt:A0A078I2C6 | MapMan:35.1 | : | : | : |
Description
BnaAnng07640DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2C6]
Coordinates
chrLK032567:+:189610..190473
Molecular Weight (calculated)
19226.9 Da
IEP (calculated)
10.525
GRAVY (calculated)
0.881
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDI GESSTVTKSR SHVVVDEKKK KRFVAATAGG GYKRGLAIFD FLLRLAAIVT TITASSVFLF FVIAIAIVAS YLVLSLPFSI VTIVRPLASL
101: PRLILLISNT VVVTLTTSAT AATAAIVYLA HNGNPNTNWL PICQQFGDFC QATSSAVVAA SLGIVFFLLL IVISAIALKR H
101: PRLILLISNT VVVTLTTSAT AATAAIVYLA HNGNPNTNWL PICQQFGDFC QATSSAVVAA SLGIVFFLLL IVISAIALKR H
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.