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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • plastid 1
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 2
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra026434.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43749 Canola plasma membrane 97.79 97.79
Bra005299.1-P Field mustard peroxisome, plasma membrane, vacuole 67.4 74.39
Bra017259.1-P Field mustard plasma membrane 76.24 68.32
Bra023049.1-P Field mustard cytosol, plasma membrane, vacuole 76.8 67.48
AT2G36100.1 Thale cress cytosol, plasma membrane, vacuole 75.14 66.02
Bra005298.1-P Field mustard plasma membrane 59.12 55.73
KRH72258 Soybean plasma membrane 53.04 49.48
Bra034831.1-P Field mustard cytosol, plasma membrane, vacuole 54.7 49.25
KRH32782 Soybean cytosol, plasma membrane, vacuole 51.93 48.45
KRH32784 Soybean plasma membrane 51.93 48.21
Bra041024.1-P Field mustard cytosol, plasma membrane, vacuole 54.14 48.04
KRH72256 Soybean cytosol, plasma membrane, vacuole 52.49 47.5
KRH32783 Soybean cytosol, plasma membrane, vacuole 51.38 47.45
KRH72260 Soybean plasma membrane 50.28 46.91
KRH72259 Soybean cytosol, plasma membrane, vacuole 49.72 46.15
Bra001409.1-P Field mustard cytosol, plasma membrane, vacuole 51.38 45.59
KRH32785 Soybean cytosol, plasma membrane, vacuole 49.17 44.5
Bra008708.1-P Field mustard plasma membrane 37.02 35.83
Bra006295.1-P Field mustard cytosol, plasma membrane, vacuole 37.02 35.83
Bra034349.1-P Field mustard plasma membrane 43.65 35.75
Bra000515.1-P Field mustard plasma membrane 41.99 34.39
Bra026853.1-P Field mustard plasma membrane 3.31 3.08
Protein Annotations
EnsemblPlants:Bra017260.1EnsemblPlants:Bra017260.1-PEnsemblPlantsGene:Bra017260GO:GO:0005575GO:GO:0005623GO:GO:0005886
GO:GO:0016020GO:GO:0016021InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615PANTHER:PTHR11615:SF116
PFAM:PF04535SEG:segTIGRFAMs:TIGR01569TMHMM:TMhelixUniParc:UPI0002544056UniProt:M4DL79
MapMan:35.1:::::
Description
AT5G06200 (E=5e-022) | integral membrane family protein
Coordinates
chrA04:-:15705013..15705874
Molecular Weight (calculated)
19182.8 Da
IEP (calculated)
10.149
GRAVY (calculated)
0.907
Length
181 amino acids
Sequence
(BLAST)
001: MAKESTTIDI GESSTVTKSR SHVVVDEKKK KRFVAATAGG GYKRGLAIFD FLLRLAAIVT TITASSVFLF FVIAIAIVAS YLVLSLPFSI VTIVHPLAAL
101: SRLILLISDT VVVTLTTSAT AATAAIVYLA HNGNPNTNWL PICQQFGDFC QATSSAVVAA SLGIVFFLLL IVISAIALKR H
Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.