Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 63.11 | 79.27 |
| CDX84159 | Canola | plasma membrane | 79.13 | 78.74 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 76.21 | 77.72 |
| Bra017259.1-P | Field mustard | plasma membrane | 75.73 | 77.23 |
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 76.21 | 76.21 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 76.21 | 76.21 |
| CDY43749 | Canola | plasma membrane | 66.5 | 75.69 |
| CDX75070 | Canola | plasma membrane | 75.73 | 75.36 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 75.24 | 75.24 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 75.24 | 75.24 |
| Bra017260.1-P | Field mustard | plasma membrane | 66.02 | 75.14 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 74.76 | 74.76 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 59.22 | 59.8 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 57.77 | 58.91 |
| KRH72258 | Soybean | plasma membrane | 55.34 | 58.76 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 53.88 | 56.63 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 54.85 | 56.5 |
| KRH32784 | Soybean | plasma membrane | 53.4 | 56.41 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 56.19 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 52.91 | 55.9 |
| KRH72260 | Soybean | plasma membrane | 51.94 | 55.15 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 52.43 | 54.0 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 49.51 | 46.15 |
| AT5G15290.1 | Thale cress | cytosol, plasma membrane, vacuole | 41.75 | 45.99 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 2.91 | 2.87 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.08 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.97 | 1.08 |
Protein Annotations
| MapMan:35.1 | EntrezGene:818183 | UniProt:A0A178VVX3 | ProteinID:AAD26967.1 | ProteinID:AEC09206.1 | EMBL:AK228127 |
| ArrayExpress:AT2G36100 | EnsemblPlantsGene:AT2G36100 | RefSeq:AT2G36100 | TAIR:AT2G36100 | RefSeq:AT2G36100-TAIR-G | EnsemblPlants:AT2G36100.1 |
| TAIR:AT2G36100.1 | Unigene:At.42995 | EMBL:BT003113 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0007043 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0030312 | GO:GO:0042545 | GO:GO:0042803 | GO:GO:0048226 | GO:GO:0051536 | GO:GO:0071555 |
| RefSeq:NP_181154.1 | ProteinID:OAP09974.1 | PFAM:PF04535 | PO:PO:0009005 | PO:PO:0020100 | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF116 | UniProt:Q9SIH4 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000000BEEF | SEG:seg |
Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
Coordinates
chr2:-:15159591..15160799
Molecular Weight (calculated)
21970.9 Da
IEP (calculated)
8.476
GRAVY (calculated)
0.736
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.