Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX75070 | Canola | plasma membrane | 94.66 | 94.2 |
CDX84579 | Canola | cytosol, plasma membrane, vacuole | 93.69 | 93.69 |
CDX79653 | Canola | cytosol, plasma membrane, vacuole | 93.2 | 93.2 |
CDY43748 | Canola | cytosol, plasma membrane, vacuole | 89.32 | 91.09 |
CDX75071 | Canola | cytosol, plasma membrane, vacuole | 85.92 | 85.92 |
CDX84159 | Canola | plasma membrane | 79.61 | 79.23 |
CDY43749 | Canola | plasma membrane | 68.93 | 78.45 |
AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 74.76 | 74.76 |
CDY08514 | Canola | cytosol, plasma membrane, vacuole | 61.16 | 62.69 |
KRH72258 | Soybean | plasma membrane | 58.25 | 61.86 |
CDY62471 | Canola | cytosol, plasma membrane, vacuole | 60.68 | 61.27 |
CDY01034 | Canola | cytosol, plasma membrane, vacuole | 60.68 | 61.27 |
KRH32784 | Soybean | plasma membrane | 57.28 | 60.51 |
CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.22 | 59.8 |
KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 56.8 | 59.69 |
KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 57.28 | 59.0 |
KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 55.34 | 58.46 |
KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 54.85 | 58.25 |
KRH72260 | Soybean | plasma membrane | 53.4 | 56.7 |
KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 53.88 | 55.5 |
CDY00740 | Canola | plasma membrane | 38.84 | 49.08 |
CDY69259 | Canola | extracellular, plasma membrane | 19.9 | 47.13 |
CDY30551 | Canola | plasma membrane | 49.03 | 45.7 |
CDX77114 | Canola | plasma membrane | 49.03 | 45.7 |
CDY31172 | Canola | plasma membrane | 47.57 | 44.34 |
CDX83261 | Canola | plasma membrane | 47.57 | 44.34 |
CDX70605 | Canola | cytosol, plasma membrane, vacuole | 39.32 | 43.32 |
CDX78624 | Canola | cytosol, plasma membrane, vacuole | 39.32 | 43.32 |
CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.35 | 42.25 |
CDY11718 | Canola | plasma membrane | 20.39 | 42.0 |
CDY33770 | Canola | plasma membrane | 2.91 | 3.08 |
PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.08 |
Solyc05g007790.2.1 | Tomato | plasma membrane | 0.97 | 1.08 |
Protein Annotations
EnsemblPlants:CDX84158 | EnsemblPlantsGene:GSBRNA2T00141181001 | GO:A0A078D9Z7 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
PANTHER:PTHR11615:SF116 | PFAM:PF04535 | ProteinID:CDX84158 | ProteinID:CDX84158.1 | SEG:seg | TIGRFAMs:TIGR01569 |
TMHMM:TMhelix | UniParc:UPI0004EF07B9 | MapMan:35.1 | : | : | : |
Description
BnaC04g09200D
Coordinates
chrLK031836:+:276697..277622
Molecular Weight (calculated)
21856.8 Da
IEP (calculated)
7.507
GRAVY (calculated)
0.840
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDI GEPSTVTKSS SHVAVDEKKK GFVAAAAGGG YKRGLTIFDF LLRLAAIGIT IGASSVMFTA EETLPFFTQF LQFQAGYDDF PTFQFFVISI
101: AIVASYLVLS LPFSIVSIVR PLAVVPRLIL LISDTVVLTL TTAAAAAAAA IVYLAHNGNA NTNWLPICQQ FGDFCQATST AVVAASISVV FFVLLIVISA
201: IALKRH
101: AIVASYLVLS LPFSIVSIVR PLAVVPRLIL LISDTVVLTL TTAAAAAAAA IVYLAHNGNA NTNWLPICQQ FGDFCQATST AVVAASISVV FFVLLIVISA
201: IALKRH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.