Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
  • golgi 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75070 Canola plasma membrane 94.66 94.2
CDX84579 Canola cytosol, plasma membrane, vacuole 93.69 93.69
CDX79653 Canola cytosol, plasma membrane, vacuole 93.2 93.2
CDY43748 Canola cytosol, plasma membrane, vacuole 89.32 91.09
CDX75071 Canola cytosol, plasma membrane, vacuole 85.92 85.92
CDX84159 Canola plasma membrane 79.61 79.23
CDY43749 Canola plasma membrane 68.93 78.45
AT2G36100.1 Thale cress cytosol, plasma membrane, vacuole 74.76 74.76
CDY08514 Canola cytosol, plasma membrane, vacuole 61.16 62.69
KRH72258 Soybean plasma membrane 58.25 61.86
CDY62471 Canola cytosol, plasma membrane, vacuole 60.68 61.27
CDY01034 Canola cytosol, plasma membrane, vacuole 60.68 61.27
KRH32784 Soybean plasma membrane 57.28 60.51
CDX73869 Canola endoplasmic reticulum, plasma membrane, vacuole 59.22 59.8
KRH32783 Soybean cytosol, plasma membrane, vacuole 56.8 59.69
KRH72256 Soybean cytosol, plasma membrane, vacuole 57.28 59.0
KRH72259 Soybean cytosol, plasma membrane, vacuole 55.34 58.46
KRH32782 Soybean cytosol, plasma membrane, vacuole 54.85 58.25
KRH72260 Soybean plasma membrane 53.4 56.7
KRH32785 Soybean cytosol, plasma membrane, vacuole 53.88 55.5
CDY00740 Canola plasma membrane 38.84 49.08
CDY69259 Canola extracellular, plasma membrane 19.9 47.13
CDY30551 Canola plasma membrane 49.03 45.7
CDX77114 Canola plasma membrane 49.03 45.7
CDY31172 Canola plasma membrane 47.57 44.34
CDX83261 Canola plasma membrane 47.57 44.34
CDX70605 Canola cytosol, plasma membrane, vacuole 39.32 43.32
CDX78624 Canola cytosol, plasma membrane, vacuole 39.32 43.32
CDX69534 Canola cytosol, plasma membrane, vacuole 38.35 42.25
CDY11718 Canola plasma membrane 20.39 42.0
CDY33770 Canola plasma membrane 2.91 3.08
PGSC0003DMT400007419 Potato cytosol, plasma membrane, vacuole 0.97 1.09
Solyc04g005620.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 0.97 1.09
PGSC0003DMT400047376 Potato cytosol, plasma membrane, vacuole 0.97 1.08
Solyc05g007790.2.1 Tomato plasma membrane 0.97 1.08
Protein Annotations
EnsemblPlants:CDX84158EnsemblPlantsGene:GSBRNA2T00141181001GO:A0A078D9Z7InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615
PANTHER:PTHR11615:SF116PFAM:PF04535ProteinID:CDX84158ProteinID:CDX84158.1SEG:segTIGRFAMs:TIGR01569
TMHMM:TMhelixUniParc:UPI0004EF07B9MapMan:35.1:::
Description
BnaC04g09200D
Coordinates
chrLK031836:+:276697..277622
Molecular Weight (calculated)
21856.8 Da
IEP (calculated)
7.507
GRAVY (calculated)
0.840
Length
206 amino acids
Sequence
(BLAST)
001: MAKESTTIDI GEPSTVTKSS SHVAVDEKKK GFVAAAAGGG YKRGLTIFDF LLRLAAIGIT IGASSVMFTA EETLPFFTQF LQFQAGYDDF PTFQFFVISI
101: AIVASYLVLS LPFSIVSIVR PLAVVPRLIL LISDTVVLTL TTAAAAAAAA IVYLAHNGNA NTNWLPICQQ FGDFCQATST AVVAASISVV FFVLLIVISA
201: IALKRH
Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.