CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69259	Canola	extracellular, plasma membrane	44.38	95.4
Bra008708.1-P	Field mustard	plasma membrane	93.05	93.05
CDY11718	Canola	plasma membrane	45.99	86.0
AT5G15290.1	Thale cress	cytosol, plasma membrane, vacuole	84.49	84.49
CDX70605	Canola	cytosol, plasma membrane, vacuole	78.07	78.07
CDX78624	Canola	cytosol, plasma membrane, vacuole	77.54	77.54
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.92	41.18
CDY08514	Canola	cytosol, plasma membrane, vacuole	43.85	40.8
CDY62471	Canola	cytosol, plasma membrane, vacuole	43.85	40.2
CDY01034	Canola	cytosol, plasma membrane, vacuole	42.78	39.22
CDX79653	Canola	cytosol, plasma membrane, vacuole	42.78	38.84
CDX75071	Canola	cytosol, plasma membrane, vacuole	42.78	38.84
CDX84579	Canola	cytosol, plasma membrane, vacuole	42.78	38.84
CDX75070	Canola	plasma membrane	42.78	38.65
CDY43748	Canola	cytosol, plasma membrane, vacuole	41.71	38.61
CDX84158	Canola	cytosol, plasma membrane, vacuole	42.25	38.35
CDX84159	Canola	plasma membrane	42.25	38.16
CDY30551	Canola	plasma membrane	44.38	37.56
CDX77114	Canola	plasma membrane	44.38	37.56
CDX83261	Canola	plasma membrane	43.32	36.65
CDY31172	Canola	plasma membrane	42.78	36.2
CDY00740	Canola	plasma membrane	30.48	34.97
CDY43749	Canola	plasma membrane	33.16	34.25
CDY33770	Canola	plasma membrane	1.07	1.03

Protein Annotations

EnsemblPlants:CDX69534	EnsemblPlantsGene:GSBRNA2T00135535001	GO:A0A078C062	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF81	PFAM:PF04535	ProteinID:CDX69534	ProteinID:CDX69534.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EDADE3	MapMan:35.1	:	:	:

Description

BnaA10g18830D

Coordinates

chrLK031790:-:662250..663015

Molecular Weight (calculated)

20494.4 Da

IEP (calculated)

9.980

GRAVY (calculated)

0.786

Length

187 amino acids

Sequence
(BLAST)

001: MKSGQAEIVE TSKAIQKSGL MSIRNAILEF ILRIVAFFNT ITSAILMATT NETLPFFTQF IRFHAEYSDL SALTFFVIAN AVVSGYLILS LPLTFVHIVK
101: SKTQNSRVLL IILDVAMLGL LTAGASSAAA IVYLAHKGNN NTNWFSICQQ FNSFCERISG SLIGSFVAVF LLILLILLSA IALSRRH

Best Arabidopsis Sequence Match ( AT5G15290.1 )
(BLAST)

001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH

Arabidopsis Description

CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.