Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034349.1-P | Field mustard | plasma membrane | 99.09 | 99.09 |
| CDY30551 | Canola | plasma membrane | 99.09 | 99.09 |
| CDX83261 | Canola | plasma membrane | 95.93 | 95.93 |
| CDY31172 | Canola | plasma membrane | 95.02 | 95.02 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 92.76 | 92.76 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 48.42 | 53.23 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 48.42 | 52.45 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 47.51 | 51.47 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 47.51 | 51.47 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 46.15 | 49.51 |
| CDX75070 | Canola | plasma membrane | 46.15 | 49.28 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 45.7 | 49.03 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 44.8 | 49.01 |
| CDX84159 | Canola | plasma membrane | 45.25 | 48.31 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 44.8 | 48.06 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 44.34 | 47.57 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 39.82 | 47.06 |
| CDY69259 | Canola | extracellular, plasma membrane | 18.1 | 45.98 |
| KRH74902 | Soybean | endoplasmic reticulum, extracellular | 14.48 | 45.71 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 38.46 | 45.45 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 37.56 | 44.38 |
| CDY43749 | Canola | plasma membrane | 36.2 | 44.2 |
| CDY00740 | Canola | plasma membrane | 32.58 | 44.17 |
| CDY11718 | Canola | plasma membrane | 19.46 | 43.0 |
| KRH74901 | Soybean | cytosol, plasma membrane, vacuole | 15.84 | 38.46 |
| CDY33770 | Canola | plasma membrane | 1.36 | 1.54 |
Protein Annotations
| EnsemblPlants:CDX77114 | EnsemblPlantsGene:GSBRNA2T00127713001 | GO:A0A078CM60 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | ProteinID:CDX77114 | ProteinID:CDX77114.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EECA20 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g39090D
Coordinates
chrLK031809:-:1202946..1204162
Molecular Weight (calculated)
24074.8 Da
IEP (calculated)
9.239
GRAVY (calculated)
0.419
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEKAGRRR EEEEPIVQKP KLDKGKGKAH VFAPPMNYSR IMEKHKQEKV NMAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFSAD
101: YTDLPTLSSF VIVNSIVGGY LTLSLPFSIV CIIRPLAVPP RLFLILCDTA MMGLTMIAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAAALLMFLV VLSAFALKRS T
101: YTDLPTLSSF VIVNSIVGGY LTLSLPFSIV CIIRPLAVPP RLFLILCDTA MMGLTMIAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAAALLMFLV VLSAFALKRS T
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.