Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017259.1-P | Field mustard | plasma membrane | 99.5 | 99.5 |
| CDX75070 | Canola | plasma membrane | 91.58 | 89.37 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 91.09 | 89.32 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 91.09 | 89.32 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 90.59 | 88.83 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 84.65 | 83.01 |
| CDX84159 | Canola | plasma membrane | 82.67 | 80.68 |
| CDY43749 | Canola | plasma membrane | 69.31 | 77.35 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 77.72 | 76.21 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 60.89 | 61.19 |
| KRH72258 | Soybean | plasma membrane | 57.92 | 60.31 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 60.4 | 59.8 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 58.91 | 59.5 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 59.9 | 59.31 |
| KRH32784 | Soybean | plasma membrane | 56.93 | 58.97 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 59.41 | 58.82 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 56.44 | 58.16 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 54.95 | 56.92 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 54.46 | 56.7 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 54.95 | 55.5 |
| KRH72260 | Soybean | plasma membrane | 52.97 | 55.15 |
| CDY00740 | Canola | plasma membrane | 39.6 | 49.08 |
| CDY69259 | Canola | extracellular, plasma membrane | 19.31 | 44.83 |
| CDY30551 | Canola | plasma membrane | 49.01 | 44.8 |
| CDX77114 | Canola | plasma membrane | 49.01 | 44.8 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 41.09 | 44.38 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 41.09 | 44.38 |
| CDY31172 | Canola | plasma membrane | 47.52 | 43.44 |
| CDX83261 | Canola | plasma membrane | 47.52 | 43.44 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.61 | 41.71 |
| CDY11718 | Canola | plasma membrane | 19.8 | 40.0 |
| CDY33770 | Canola | plasma membrane | 2.97 | 3.08 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.99 | 1.09 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.99 | 1.09 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.99 | 1.08 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.99 | 1.08 |
Protein Annotations
| EnsemblPlants:CDY43748 | EnsemblPlantsGene:GSBRNA2T00077242001 | GO:A0A078I3Q0 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | ProteinID:CDY43748 | ProteinID:CDY43748.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0004EE5193 | UniProt:A0A078I3Q0 | MapMan:35.1 | : | : | : |
Description
BnaAnng07630DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3Q0]
Coordinates
chrLK032567:+:187486..188694
Molecular Weight (calculated)
21444.3 Da
IEP (calculated)
8.239
GRAVY (calculated)
0.826
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIEV GEPSTVTKST SHEKKKGFVA AAAGGGHKRG LAIFDFLLRL AAIGITIGAS SVMFTAEETL PFFTQFLQFQ AGYDDFPTFQ FFVIAIAIVA
101: SYLVLALPFS IVTIVRPLAV VPRLILLISD TVVLTLTTSA AAAAASIVYL AHNGNANTNW LPICQQFGDF CQTASTAVVA ASISVVFFVL LIVISAIALK
201: RH
101: SYLVLALPFS IVTIVRPLAV VPRLILLISD TVVLTLTTSA AAAAASIVYL AHNGNANTNW LPICQQFGDF CQTASTAVVA ASISVVFFVL LIVISAIALK
201: RH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.