Factsheet for Bra017259.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026434.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36100.1	Bra027174.1-P	AT3G16310.1	21798944
AT2G36100.1	Bra026434.1-P	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43748	Canola	cytosol, plasma membrane, vacuole	99.5	99.5
Bra023049.1-P	Field mustard	cytosol, plasma membrane, vacuole	91.09	89.32
Bra005299.1-P	Field mustard	peroxisome, plasma membrane, vacuole	64.85	79.88
Bra017260.1-P	Field mustard	plasma membrane	68.32	76.24
AT2G36100.1	Thale cress	cytosol, plasma membrane, vacuole	77.23	75.73
Bra005298.1-P	Field mustard	plasma membrane	70.79	74.48
KRH72258	Soybean	plasma membrane	57.92	60.31
Bra034831.1-P	Field mustard	cytosol, plasma membrane, vacuole	59.41	59.7
KRH72256	Soybean	cytosol, plasma membrane, vacuole	58.42	59.0
KRH32784	Soybean	plasma membrane	56.93	58.97
Bra041024.1-P	Field mustard	cytosol, plasma membrane, vacuole	59.41	58.82
KRH32783	Soybean	cytosol, plasma membrane, vacuole	56.44	58.16
Bra001409.1-P	Field mustard	cytosol, plasma membrane, vacuole	58.42	57.84
KRH72259	Soybean	cytosol, plasma membrane, vacuole	54.95	56.92
KRH32782	Soybean	cytosol, plasma membrane, vacuole	54.46	56.7
KRH72260	Soybean	plasma membrane	52.97	55.15
KRH32785	Soybean	cytosol, plasma membrane, vacuole	54.46	55.0
Bra034349.1-P	Field mustard	plasma membrane	49.01	44.8
Bra006295.1-P	Field mustard	cytosol, plasma membrane, vacuole	41.09	44.38
Bra000515.1-P	Field mustard	plasma membrane	47.52	43.44
Bra008708.1-P	Field mustard	plasma membrane	39.6	42.78
Bra026853.1-P	Field mustard	plasma membrane	2.97	3.08

Protein Annotations

EnsemblPlants:Bra017259.1	EnsemblPlants:Bra017259.1-P	EnsemblPlantsGene:Bra017259	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116
PFAM:PF04535	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0002544057	UniProt:M4DL78
MapMan:35.1	:	:	:	:	:

Description

AT2G36100 (E=2e-049) | integral membrane family protein

Coordinates

chrA04:-:15706997..15707957

Molecular Weight (calculated)

21460.3 Da

IEP (calculated)

8.239

GRAVY (calculated)

0.813

Length

202 amino acids

Sequence
(BLAST)

001: MAKESTTIEV GEPSTVTKST SHEKKKGFVA AAAGGGHKRG LAIFDFLLRL AAIGITIGAS SVMFTAEETL PFFTQFLQFQ AGYDDFPTFQ FFVISIAIVA
101: SYLVLALPFS IVTIVRPLAV VPRLILLISD TVVLTLTTSA AAAAASIVYL AHNGNANTNW LPICQQFGDF CQTASTAVVA ASISVVFFVL LIVISAIALK
201: RH

Best Arabidopsis Sequence Match ( AT2G36100.1 )
(BLAST)

001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH

Arabidopsis Description

CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.