Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- plasma membrane 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017259.1-P | Field mustard | plasma membrane | 74.48 | 70.79 |
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 72.92 | 67.96 |
| Bra017260.1-P | Field mustard | plasma membrane | 55.73 | 59.12 |
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 50.0 | 58.54 |
| Bra041024.1-P | Field mustard | cytosol, plasma membrane, vacuole | 51.56 | 48.53 |
| Bra034831.1-P | Field mustard | cytosol, plasma membrane, vacuole | 50.52 | 48.26 |
| Bra001409.1-P | Field mustard | cytosol, plasma membrane, vacuole | 49.48 | 46.57 |
| Bra006295.1-P | Field mustard | cytosol, plasma membrane, vacuole | 34.38 | 35.29 |
| Bra034349.1-P | Field mustard | plasma membrane | 40.62 | 35.29 |
| Bra000515.1-P | Field mustard | plasma membrane | 39.58 | 34.39 |
| Bra008708.1-P | Field mustard | plasma membrane | 32.81 | 33.69 |
| Bra026853.1-P | Field mustard | plasma membrane | 0.0 | 0.0 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.0 | 0.0 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra005298.1 | EnsemblPlants:Bra005298.1-P | EnsemblPlantsGene:Bra005298 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI0002547C75 | UniProt:M4CM61 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT2G36100 (E=1e-020) | integral membrane family protein
Coordinates
chrA05:+:4622025..4622960
Molecular Weight (calculated)
20611.0 Da
IEP (calculated)
9.021
GRAVY (calculated)
0.314
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDV GEPSTITKSS SHVVVDEKKK KKGFVAAAAG GGYKRGLAIF DFLLRLAAIG ITIGASSVMF TAEETLPFFT QFLQFQAGYD DFPTFHRQLS
101: RPLTSLLHRI YCPSTCGCTP AHPPHLRHPA AAAAAAIVYL AHNGNANTNW LPICQQFGDF CQATSTAVVA ASISVVFFVL LIVISAIALK RH
101: RPLTSLLHRI YCPSTCGCTP AHPPHLRHPA AAAAAAIVYL AHNGNANTNW LPICQQFGDF CQATSTAVVA ASISVVFFVL LIVISAIALK RH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.