Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83261 | Canola | plasma membrane | 100.0 | 100.0 |
| CDY31172 | Canola | plasma membrane | 99.09 | 99.09 |
| Bra034349.1-P | Field mustard | plasma membrane | 95.93 | 95.93 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 92.31 | 92.31 |
| Bra034831.1-P | Field mustard | cytosol, plasma membrane, vacuole | 46.61 | 51.24 |
| Bra041024.1-P | Field mustard | cytosol, plasma membrane, vacuole | 46.61 | 50.49 |
| Bra001409.1-P | Field mustard | cytosol, plasma membrane, vacuole | 45.7 | 49.51 |
| Bra017259.1-P | Field mustard | plasma membrane | 43.44 | 47.52 |
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 43.44 | 46.6 |
| KRH74902 | Soybean | endoplasmic reticulum, extracellular | 14.48 | 45.71 |
| Bra006295.1-P | Field mustard | cytosol, plasma membrane, vacuole | 38.01 | 44.92 |
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 32.13 | 43.29 |
| Bra008708.1-P | Field mustard | plasma membrane | 36.2 | 42.78 |
| Bra017260.1-P | Field mustard | plasma membrane | 34.39 | 41.99 |
| Bra005298.1-P | Field mustard | plasma membrane | 34.39 | 39.58 |
| KRH74901 | Soybean | cytosol, plasma membrane, vacuole | 15.84 | 38.46 |
| Bra026853.1-P | Field mustard | plasma membrane | 1.36 | 1.54 |
Protein Annotations
| EnsemblPlants:Bra000515.1 | EnsemblPlants:Bra000515.1-P | EnsemblPlantsGene:Bra000515 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000254002E | UniProt:M4C8I7 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT2G27370 (E=3e-093) | integral membrane family protein
Coordinates
chrA03:+:11526363..11527514
Molecular Weight (calculated)
23894.5 Da
IEP (calculated)
8.930
GRAVY (calculated)
0.440
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEKAGSRR EEEEPIVQKP KLDKGKGKAH VFAPPMNYSR IMEKHKQEKV SMPGWKRGVA IVDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFSAD
101: YTDLPTLSSF VVVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLVLCDTA MMGLTMIAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAAALLMVLV ILSAFALKRS T
101: YTDLPTLSSF VVVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLVLCDTA MMGLTMIAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAAALLMVLV ILSAFALKRS T
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.