Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034349.1-P | Field mustard | plasma membrane | 93.67 | 93.67 |
| CDY30551 | Canola | plasma membrane | 93.67 | 93.67 |
| CDX77114 | Canola | plasma membrane | 92.76 | 92.76 |
| Bra000515.1-P | Field mustard | plasma membrane | 92.31 | 92.31 |
| CDX83261 | Canola | plasma membrane | 92.31 | 92.31 |
| CDY31172 | Canola | plasma membrane | 91.4 | 91.4 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 48.42 | 52.97 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 46.15 | 50.0 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 46.15 | 49.51 |
| AT5G15290.1 | Thale cress | cytosol, plasma membrane, vacuole | 37.56 | 44.38 |
| KRH74902 | Soybean | endoplasmic reticulum, extracellular | 14.03 | 44.29 |
| KRH74901 | Soybean | cytosol, plasma membrane, vacuole | 15.38 | 37.36 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 2.71 | 2.87 |
Protein Annotations
| MapMan:35.1 | EntrezGene:817280 | UniProt:A0A178VTI8 | ProteinID:AAD41993.1 | ProteinID:AAM15182.1 | ProteinID:AEC07986.1 |
| EMBL:AK227595 | ArrayExpress:AT2G27370 | EnsemblPlantsGene:AT2G27370 | RefSeq:AT2G27370 | TAIR:AT2G27370 | RefSeq:AT2G27370-TAIR-G |
| EnsemblPlants:AT2G27370.1 | TAIR:AT2G27370.1 | EMBL:BT003063 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0007043 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0030312 | GO:GO:0042545 | GO:GO:0042803 | GO:GO:0048226 | GO:GO:0051536 | GO:GO:0071555 |
| RefSeq:NP_180305.1 | ProteinID:OAP09114.1 | PFAM:PF04535 | PO:PO:0009005 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| UniProt:Q9ZQI2 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000000BEBF | SEG:seg | : |
Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
Coordinates
chr2:-:11708429..11710128
Molecular Weight (calculated)
24162.9 Da
IEP (calculated)
8.934
GRAVY (calculated)
0.381
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.