Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69259 | Canola | extracellular, plasma membrane | 40.64 | 87.36 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 84.49 | 84.49 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 83.42 | 83.42 |
| Bra006295.1-P | Field mustard | cytosol, plasma membrane, vacuole | 82.35 | 82.35 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 81.82 | 81.82 |
| Bra008708.1-P | Field mustard | plasma membrane | 81.28 | 81.28 |
| CDY11718 | Canola | plasma membrane | 42.25 | 79.0 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 45.99 | 41.75 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 43.32 | 40.1 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 42.25 | 38.73 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 44.38 | 37.56 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 1.6 | 1.44 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831381 | ProteinID:AED92144.1 | EMBL:AK117342 | ArrayExpress:AT5G15290 | EnsemblPlantsGene:AT5G15290 |
| RefSeq:AT5G15290 | TAIR:AT5G15290 | RefSeq:AT5G15290-TAIR-G | EnsemblPlants:AT5G15290.1 | TAIR:AT5G15290.1 | Unigene:At.31822 |
| EMBL:BT003725 | ProteinID:CAB89339.1 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007043 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030312 |
| GO:GO:0042545 | GO:GO:0042803 | GO:GO:0048226 | GO:GO:0051536 | GO:GO:0071555 | RefSeq:NP_197033.1 |
| PFAM:PF04535 | PO:PO:0009005 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF81 | UniProt:Q9LXF3 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI000000C129 | SEG:seg | : | : | : |
Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
Coordinates
chr5:+:4967011..4968092
Molecular Weight (calculated)
20584.7 Da
IEP (calculated)
10.457
GRAVY (calculated)
0.737
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.