Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 95.72 | 95.72 |
| CDY69259 | Canola | extracellular, plasma membrane | 38.5 | 82.76 |
| AT5G15290.1 | Thale cress | cytosol, plasma membrane, vacuole | 81.82 | 81.82 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 78.07 | 78.07 |
| CDY11718 | Canola | plasma membrane | 40.11 | 75.0 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 45.45 | 41.26 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 44.38 | 41.09 |
| CDX84159 | Canola | plasma membrane | 44.92 | 40.58 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 43.32 | 40.3 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 43.85 | 40.2 |
| CDX77114 | Canola | plasma membrane | 47.06 | 39.82 |
| CDY30551 | Canola | plasma membrane | 47.06 | 39.82 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 43.85 | 39.81 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 43.85 | 39.81 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 43.32 | 39.71 |
| CDX83261 | Canola | plasma membrane | 46.52 | 39.37 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 43.32 | 39.32 |
| CDX75070 | Canola | plasma membrane | 43.32 | 39.13 |
| CDY31172 | Canola | plasma membrane | 45.99 | 38.91 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 42.25 | 38.73 |
| CDY43749 | Canola | plasma membrane | 34.76 | 35.91 |
| CDY00740 | Canola | plasma membrane | 31.02 | 35.58 |
| CDY33770 | Canola | plasma membrane | 1.6 | 1.54 |
Protein Annotations
| EnsemblPlants:CDX70605 | EnsemblPlantsGene:GSBRNA2T00140449001 | GO:A0A078C120 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF81 | PFAM:PF04535 | ProteinID:CDX70605 | ProteinID:CDX70605.1 | SEG:seg | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0004EACEFF | MapMan:35.1 | : | : | : |
Description
BnaC03g06890D
Coordinates
chrLK031791:+:1198896..1199646
Molecular Weight (calculated)
20542.5 Da
IEP (calculated)
10.345
GRAVY (calculated)
0.718
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGQAEIAE TSKGIQKRGL MSRKIAIFEF ILRIIAFFNT ISSAILMATT NETLPFFTQF IRFHADYNDL PALTFFVVAN AVVSGYLILT LPLAFVHIVK
101: KKTENSRILL IILDVAMVGL LASGAASAAA IVYLAHKGNN NTNWFPVCQQ FNSFCERISG SLIGSFIAVA LLIFLIILSA IALSRRH
101: KKTENSRILL IILDVAMVGL LASGAASAAA IVYLAHKGNN NTNWFPVCQQ FNSFCERISG SLIGSFIAVA LLIFLIILSA IALSRRH
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.