CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041024.1-P	Field mustard	cytosol, plasma membrane, vacuole	99.51	99.51
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	92.65	92.65
CDY01034	Canola	cytosol, plasma membrane, vacuole	89.71	89.71
AT3G11550.1	Thale cress	cytosol, plasma membrane, vacuole	85.29	85.29
CDY08514	Canola	cytosol, plasma membrane, vacuole	79.9	81.09
CDY00740	Canola	plasma membrane	50.49	63.19
CDX84579	Canola	cytosol, plasma membrane, vacuole	62.25	61.65
KRH72258	Soybean	plasma membrane	58.33	61.34
CDX79653	Canola	cytosol, plasma membrane, vacuole	61.76	61.16
CDX84158	Canola	cytosol, plasma membrane, vacuole	61.27	60.68
CDY43748	Canola	cytosol, plasma membrane, vacuole	59.8	60.4
CDX75070	Canola	plasma membrane	61.27	60.39
CDX75071	Canola	cytosol, plasma membrane, vacuole	60.78	60.19
CDX84159	Canola	plasma membrane	59.8	58.94
KRH32784	Soybean	plasma membrane	55.88	58.46
KRH32782	Soybean	cytosol, plasma membrane, vacuole	55.39	58.25
KRH72256	Soybean	cytosol, plasma membrane, vacuole	56.86	58.0
KRH72260	Soybean	plasma membrane	54.41	57.22
KRH72259	Soybean	cytosol, plasma membrane, vacuole	54.41	56.92
KRH32783	Soybean	cytosol, plasma membrane, vacuole	52.94	55.1
CDY43749	Canola	plasma membrane	48.53	54.7
KRH32785	Soybean	cytosol, plasma membrane, vacuole	52.45	53.5
CDY69259	Canola	extracellular, plasma membrane	22.06	51.72
CDY30551	Canola	plasma membrane	52.45	48.42
CDX77114	Canola	plasma membrane	52.45	48.42
CDX83261	Canola	plasma membrane	50.98	47.06
CDY11718	Canola	plasma membrane	23.04	47.0
CDY31172	Canola	plasma membrane	50.49	46.61
CDX78624	Canola	cytosol, plasma membrane, vacuole	40.2	43.85
CDX69534	Canola	cytosol, plasma membrane, vacuole	40.2	43.85
CDX70605	Canola	cytosol, plasma membrane, vacuole	39.71	43.32
PGSC0003DMT400047376	Potato	cytosol, plasma membrane, vacuole	2.45	2.7
Solyc05g007790.2.1	Tomato	plasma membrane	2.45	2.7
PGSC0003DMT400007419	Potato	cytosol, plasma membrane, vacuole	1.96	2.17
Solyc04g005620.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.96	2.17
CDY33770	Canola	plasma membrane	1.96	2.05

Protein Annotations

EnsemblPlants:CDY62471	EnsemblPlantsGene:GSBRNA2T00036313001	GO:A0A078J776	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	GO:GO:0016021	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116
PFAM:PF04535	ProteinID:CDY62471	ProteinID:CDY62471.1	SEG:seg	TIGRFAMs:TIGR01569	TMHMM:TMhelix
UniParc:UPI0004EE620B	UniProt:A0A078J776	MapMan:35.1	:	:	:

Description

BnaC01g44860DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078J776]

Coordinates

chrLK034149:-:14821..16195

Molecular Weight (calculated)

21781.5 Da

IEP (calculated)

6.236

GRAVY (calculated)

0.617

Length

204 amino acids

Sequence
(BLAST)

001: MKNESTVIDV PAESSSAMKG SAPLIGVARD HTTSDSGGYK RGLSIFDFLL RLAAIIAASV AAGTMFTSDE TLPFFTQFLQ FEAGYDDLPT FQFFVIAMSM
101: ISGYLLLSLP FSVVTIVRPL ATAPRLLLLV LDTAAMAFNM AAASSAAAIG YLAHNGNQNT NWLPICQQFG DFCQKTSGAV VSSFVSVVFF IMLVVLSGVA
201: LKRH

Best Arabidopsis Sequence Match ( AT3G11550.1 )
(BLAST)

001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH

Arabidopsis Description

CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.