Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 94.2 | 94.66 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 89.37 | 91.58 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 88.89 | 89.32 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 87.92 | 88.35 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 83.57 | 83.98 |
| CDX84159 | Canola | plasma membrane | 80.68 | 80.68 |
| CDY43749 | Canola | plasma membrane | 69.08 | 79.01 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 75.36 | 75.73 |
| KRH72258 | Soybean | plasma membrane | 59.42 | 63.4 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 61.35 | 63.18 |
| KRH32784 | Soybean | plasma membrane | 57.97 | 61.54 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 60.39 | 61.27 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 60.39 | 61.27 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 58.94 | 59.8 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 56.04 | 59.79 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 56.52 | 59.69 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 57.49 | 59.5 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 55.07 | 58.46 |
| KRH72260 | Soybean | plasma membrane | 54.59 | 58.25 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 54.11 | 56.0 |
| CDY00740 | Canola | plasma membrane | 39.13 | 49.69 |
| CDY69259 | Canola | extracellular, plasma membrane | 19.81 | 47.13 |
| CDY30551 | Canola | plasma membrane | 49.28 | 46.15 |
| CDX77114 | Canola | plasma membrane | 49.28 | 46.15 |
| CDY31172 | Canola | plasma membrane | 47.83 | 44.8 |
| CDX83261 | Canola | plasma membrane | 47.83 | 44.8 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 39.13 | 43.32 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 39.13 | 43.32 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.65 | 42.78 |
| CDY11718 | Canola | plasma membrane | 20.29 | 42.0 |
| CDY33770 | Canola | plasma membrane | 2.9 | 3.08 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.08 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 0.97 | 1.08 |
Protein Annotations
| EnsemblPlants:CDX75070 | EnsemblPlantsGene:GSBRNA2T00117104001 | GO:A0A078CDX6 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF116 | PFAM:PF04535 | ProteinID:CDX75070 | ProteinID:CDX75070.1 | SEG:seg | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0004EDB98E | MapMan:35.1 | : | : | : |
Description
BnaA05g08160D
Coordinates
chrLK031802:+:2310043..2311490
Molecular Weight (calculated)
21983.0 Da
IEP (calculated)
8.221
GRAVY (calculated)
0.841
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIDV GEPSTITKSS SHVVVDEKKK KGFVAAAAGG GYKRGLAIFD FLLRLAAIGI TIGASSVMFT AEETLPFFTQ FLQFQAGYDD FPTFQFFVIS
101: IAIVASYLVL SLPFSIVSIV RPLAVVPRLI LLISDTVVLT LTTAAAAAAA AIVYLAHNGN ANTNWLPICQ QFGDFCQATS TAVVAASISV VFFVLLIVIS
201: AIALKRH
101: IAIVASYLVL SLPFSIVSIV RPLAVVPRLI LLISDTVVLT LTTAAAAAAA AIVYLAHNGN ANTNWLPICQ QFGDFCQATS TAVVAASISV VFFVLLIVIS
201: AIALKRH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.