CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, vacuole

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034831.1-P	Field mustard	cytosol, plasma membrane, vacuole	93.53	93.53
CDY01034	Canola	cytosol, plasma membrane, vacuole	90.05	88.73
CDY62471	Canola	cytosol, plasma membrane, vacuole	81.09	79.9
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	80.6	79.41
AT3G11550.1	Thale cress	cytosol, plasma membrane, vacuole	77.61	76.47
CDY00740	Canola	plasma membrane	52.24	64.42
CDX84159	Canola	plasma membrane	64.18	62.32
KRH72258	Soybean	plasma membrane	59.7	61.86
CDX75071	Canola	cytosol, plasma membrane, vacuole	63.18	61.65
CDX75070	Canola	plasma membrane	63.18	61.35
KRH32782	Soybean	cytosol, plasma membrane, vacuole	59.2	61.34
CDX84579	Canola	cytosol, plasma membrane, vacuole	62.69	61.16
CDX84158	Canola	cytosol, plasma membrane, vacuole	62.69	61.16
CDX79653	Canola	cytosol, plasma membrane, vacuole	62.69	61.16
CDY43748	Canola	cytosol, plasma membrane, vacuole	61.19	60.89
KRH72260	Soybean	plasma membrane	58.21	60.31
KRH72256	Soybean	cytosol, plasma membrane, vacuole	58.71	59.0
KRH32784	Soybean	plasma membrane	57.21	58.97
KRH72259	Soybean	cytosol, plasma membrane, vacuole	56.72	58.46
CDY43749	Canola	plasma membrane	51.24	56.91
KRH32783	Soybean	cytosol, plasma membrane, vacuole	55.22	56.63
KRH32785	Soybean	cytosol, plasma membrane, vacuole	52.74	53.0
CDY69259	Canola	extracellular, plasma membrane	21.39	49.43
CDY30551	Canola	plasma membrane	53.23	48.42
CDX77114	Canola	plasma membrane	53.23	48.42
CDX83261	Canola	plasma membrane	51.74	47.06
CDY31172	Canola	plasma membrane	51.24	46.61
CDY11718	Canola	plasma membrane	22.39	45.0
CDX78624	Canola	cytosol, plasma membrane, vacuole	40.8	43.85
CDX69534	Canola	cytosol, plasma membrane, vacuole	40.8	43.85
CDX70605	Canola	cytosol, plasma membrane, vacuole	40.3	43.32
PGSC0003DMT400047376	Potato	cytosol, plasma membrane, vacuole	2.49	2.7
Solyc05g007790.2.1	Tomato	plasma membrane	2.49	2.7
PGSC0003DMT400007419	Potato	cytosol, plasma membrane, vacuole	1.99	2.17
Solyc04g005620.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.99	2.17
CDY33770	Canola	plasma membrane	1.99	2.05

Protein Annotations

MapMan:35.1	GO:A0A078F650	UniProt:A0A078F650	InterPro:CASP/CASPL	InterPro:CASP_dom	EnsemblPlants:CDY08514
ProteinID:CDY08514	ProteinID:CDY08514.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00000289001	PFAM:PF04535	PANTHER:PTHR11615	PANTHER:PTHR11615:SF116	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EE012E	SEG:seg	:	:	:

Description

BnaA05g27500DCASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078F650]

Coordinates

chrLK031986:-:521233..522086

Molecular Weight (calculated)

21414.3 Da

IEP (calculated)

6.778

GRAVY (calculated)

0.692

Length

201 amino acids

Sequence
(BLAST)

001: MKNESTFIDV PAESSSAMKG KSPLIGVAKD HTTGGYNRGL SIFDFLLRLA AIVAASVAAG TMFTSDETLP FFTQFLQFEA GYDDLPTFQF FVIAMSMVAG
101: YIVLSLPISV VTIVRPLAAA PRLLLLVLDT AIMGLTMAAA SSAAAISYVA HNGNQNTNWL PICQQFGDFC QKTSGAVVSS FVAVVFFMIL VVLSGVALKR
201: H

Best Arabidopsis Sequence Match ( AT3G11550.1 )
(BLAST)

001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH

Arabidopsis Description

CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [cytosol,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.