CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034831.1-P	Field mustard	cytosol, plasma membrane, vacuole	93.63	95.02
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	90.69	90.69
CDY08514	Canola	cytosol, plasma membrane, vacuole	88.73	90.05
CDY62471	Canola	cytosol, plasma membrane, vacuole	89.71	89.71
AT3G11550.1	Thale cress	cytosol, plasma membrane, vacuole	87.25	87.25
CDY00740	Canola	plasma membrane	50.98	63.8
CDX84579	Canola	cytosol, plasma membrane, vacuole	61.76	61.16
KRH72258	Soybean	plasma membrane	57.84	60.82
CDX79653	Canola	cytosol, plasma membrane, vacuole	61.27	60.68
CDX84158	Canola	cytosol, plasma membrane, vacuole	61.27	60.68
CDX75071	Canola	cytosol, plasma membrane, vacuole	61.27	60.68
CDX84159	Canola	plasma membrane	61.27	60.39
CDX75070	Canola	plasma membrane	61.27	60.39
CDY43748	Canola	cytosol, plasma membrane, vacuole	59.31	59.9
KRH32782	Soybean	cytosol, plasma membrane, vacuole	56.37	59.28
KRH72256	Soybean	cytosol, plasma membrane, vacuole	57.35	58.5
KRH32784	Soybean	plasma membrane	55.88	58.46
KRH72260	Soybean	plasma membrane	54.9	57.73
KRH72259	Soybean	cytosol, plasma membrane, vacuole	54.9	57.44
KRH32783	Soybean	cytosol, plasma membrane, vacuole	53.43	55.61
CDY43749	Canola	plasma membrane	49.02	55.25
KRH32785	Soybean	cytosol, plasma membrane, vacuole	52.45	53.5
CDY69259	Canola	extracellular, plasma membrane	21.08	49.43
CDY30551	Canola	plasma membrane	51.47	47.51
CDX77114	Canola	plasma membrane	51.47	47.51
CDX83261	Canola	plasma membrane	50.0	46.15
CDY31172	Canola	plasma membrane	49.51	45.7
CDY11718	Canola	plasma membrane	22.06	45.0
CDX78624	Canola	cytosol, plasma membrane, vacuole	39.22	42.78
CDX69534	Canola	cytosol, plasma membrane, vacuole	39.22	42.78
CDX70605	Canola	cytosol, plasma membrane, vacuole	38.73	42.25
PGSC0003DMT400047376	Potato	cytosol, plasma membrane, vacuole	2.45	2.7
Solyc05g007790.2.1	Tomato	plasma membrane	2.45	2.7
PGSC0003DMT400007419	Potato	cytosol, plasma membrane, vacuole	1.96	2.17
Solyc04g005620.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.96	2.17
CDY33770	Canola	plasma membrane	1.96	2.05

Protein Annotations

EnsemblPlants:CDY01034	EnsemblPlantsGene:GSBRNA2T00111061001	GO:A0A078EJZ8	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF116	PFAM:PF04535	ProteinID:CDY01034	ProteinID:CDY01034.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EC89E9	MapMan:35.1	:	:	:

Description

BnaC05g41660D

Coordinates

chrLK031923:+:806801..807751

Molecular Weight (calculated)

21629.5 Da

IEP (calculated)

6.778

GRAVY (calculated)

0.684

Length

204 amino acids

Sequence
(BLAST)

001: MKNESTFIDV PAESSSAMKG KAPLIGVAKD HTTSGSGGYN RGLSIFDFLL RLAAIVAASV AAGTMFTSDE TLPFFTQFLQ FEAGYDDLPT FQFFVIAMSM
101: VAGYIVLSLP ISVVTIVRPL AAAPRLLLLV LDTAIMGLTM AAASSAAAIS YVAHNGNQNT NWLPICQQFG DFCQKTSGAV VSSFVAVVFF MILVVLSGVA
201: LKRH

Best Arabidopsis Sequence Match ( AT3G11550.1 )
(BLAST)

001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH

Arabidopsis Description

CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.