Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 66.26 | 52.94 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 64.42 | 52.24 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 63.8 | 50.98 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 63.19 | 50.49 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 58.9 | 47.06 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 50.92 | 40.29 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 50.92 | 40.29 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 49.08 | 39.6 |
| CDX75070 | Canola | plasma membrane | 49.69 | 39.13 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 49.08 | 38.84 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 46.01 | 38.46 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 48.47 | 38.35 |
| CDX84159 | Canola | plasma membrane | 48.47 | 38.16 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 46.01 | 37.5 |
| KRH72260 | Soybean | plasma membrane | 44.17 | 37.11 |
| KRH72258 | Soybean | plasma membrane | 44.17 | 37.11 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 44.17 | 36.73 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 43.56 | 36.6 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 44.79 | 36.5 |
| KRH32784 | Soybean | plasma membrane | 43.56 | 36.41 |
| CDY43749 | Canola | plasma membrane | 36.2 | 32.6 |
| CDY30551 | Canola | plasma membrane | 44.17 | 32.58 |
| CDX77114 | Canola | plasma membrane | 44.17 | 32.58 |
| CDY31172 | Canola | plasma membrane | 43.56 | 32.13 |
| CDX83261 | Canola | plasma membrane | 43.56 | 32.13 |
| CDX70605 | Canola | cytosol, plasma membrane, vacuole | 35.58 | 31.02 |
| CDX78624 | Canola | cytosol, plasma membrane, vacuole | 35.58 | 31.02 |
| CDX69534 | Canola | cytosol, plasma membrane, vacuole | 34.97 | 30.48 |
| CDY69259 | Canola | extracellular, plasma membrane | 8.59 | 16.09 |
| CDY11718 | Canola | plasma membrane | 9.82 | 16.0 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 3.07 | 2.7 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 3.07 | 2.7 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 2.45 | 2.17 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 2.45 | 2.17 |
| CDY33770 | Canola | plasma membrane | 2.45 | 2.05 |
Protein Annotations
| EnsemblPlants:CDY00740 | EnsemblPlantsGene:GSBRNA2T00110599001 | GO:A0A078EF70 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
| PANTHER:PTHR11615:SF116 | PFAM:PF04535 | ProteinID:CDY00740 | ProteinID:CDY00740.1 | SEG:seg | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0004EDF7AE | MapMan:35.1 | : | : | : |
Description
BnaC03g37240D
Coordinates
chrLK031921:+:702047..702621
Molecular Weight (calculated)
18139.6 Da
IEP (calculated)
9.429
GRAVY (calculated)
0.695
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKASLIGV AKDHTTSGSG GYKRGLSIFD FLLRLAAIIA ASVAAGTMFT SDETLPFFTQ FLQFEAGYDD LPTYQFFVIA MSIVSGYLVL SLPISVVTIV
101: HPLASAPRLL LLVLDTVHTQ NLFNILLLPF LNTKRFKRYF CSKLSIFNIQ FINILCYMIS HIM
101: HPLASAPRLL LLVLDTVHTQ NLFNILLLPF LNTKRFKRYF CSKLSIFNIQ FINILCYMIS HIM
001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
Arabidopsis Description
CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [cytosol,plasma membrane,vacuole]
SUBAcon: [cytosol,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.