Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g120880.2.1 | |
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | Solyc03g120880.2.1 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 96.22 | 96.22 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 77.84 | 78.26 |
| CDY00740 | Canola | plasma membrane | 2.7 | 3.07 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.49 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 2.7 | 2.48 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 2.7 | 2.45 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 2.7 | 2.45 |
| Solyc02g067190.2.1 | Tomato | extracellular, plasma membrane | 2.16 | 2.27 |
| KRH72260 | Soybean | plasma membrane | 2.16 | 2.06 |
| KRH72258 | Soybean | plasma membrane | 2.16 | 2.06 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.06 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.05 |
| KRH32784 | Soybean | plasma membrane | 2.16 | 2.05 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.04 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.0 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 2.16 | 2.0 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 2.16 | 1.9 |
| Solyc10g083250.1.1 | Tomato | plasma membrane | 2.16 | 1.89 |
| Solyc09g010200.2.1 | Tomato | cytosol, plasma membrane, vacuole | 2.16 | 1.86 |
| Solyc02g088160.2.1 | Tomato | cytosol | 2.16 | 1.75 |
| CDX84159 | Canola | plasma membrane | 1.62 | 1.45 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.99 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 1.08 | 0.97 |
| CDX75070 | Canola | plasma membrane | 1.08 | 0.97 |
| CDY43749 | Canola | plasma membrane | 0.54 | 0.55 |
| Bra005298.1-P | Field mustard | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc05g007790.2.1 | EnsemblPlantsGene:Solyc05g007790.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | InterPro:CASP/CASPL | InterPro:CASP_dom |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF81 | PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002765EB4 | UniProt:K4BWV4 | MapMan:35.1 | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4BWV4]
Coordinates
chr5:-:2238342..2239417
Molecular Weight (calculated)
19802.4 Da
IEP (calculated)
9.252
GRAVY (calculated)
0.748
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAVSIETGE GSKAKRVHGV NRGISVFDLV LRIVALVGTL ASAVAMGTAD QALPFSTQIV NFEAQYDDID SFKFFVVSNS IVCVYLALSI TISIFHIIRS
101: RAGKSRVLLI VLDAIMLVFL TSGASAAAAI VYLAHNGNTS TNWFSICQQY TDFCQRSAGS LIGSFGAMAL MVILIILSSI ALSRR
101: RAGKSRVLLI VLDAIMLVFL TSGASAAAAI VYLAHNGNTS TNWFSICQQY TDFCQRSAGS LIGSFGAMAL MVILIILSSI ALSRR
001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH
Arabidopsis Description
CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.