Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 5
- cytosol 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072599 | Potato | plasma membrane | 88.21 | 88.21 |
| Solyc09g010200.2.1 | Tomato | cytosol, plasma membrane, vacuole | 66.98 | 66.05 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 55.19 | 55.71 |
| Solyc02g067190.2.1 | Tomato | extracellular, plasma membrane | 42.45 | 51.14 |
| Solyc02g088160.2.1 | Tomato | cytosol | 26.89 | 24.89 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 1.89 | 2.17 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 1.89 | 2.16 |
Protein Annotations
| EnsemblPlants:Solyc10g083250.1.1 | EnsemblPlantsGene:Solyc10g083250.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | InterPro:CASP/CASPL | InterPro:CASP_dom |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 | PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002769DA3 | UniProt:K4D3B2 | MapMan:35.1 | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4D3B2]
Coordinates
chr10:-:63095040..63096372
Molecular Weight (calculated)
22315.4 Da
IEP (calculated)
7.559
GRAVY (calculated)
0.775
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSESTKID VVETNKEKKG KAPLLGTAAA PAIVAAVGHD GHAKGGAKRG IAIFDLILRI AAFASALGAT VAMATTEETL PFFTQFFQFE ASYDDLPTFS
101: FFVVGMGIVV AYLVLSVPFS IVCIVRSHAV VPRLLLIIFD TVIIALATGA AGSSAAIVYL AHNGNQDANW LAICQQFGDF CQRASGAVVA AFVTVVLLIL
201: MVVISASALR RH
101: FFVVGMGIVV AYLVLSVPFS IVCIVRSHAV VPRLLLIIFD TVIIALATGA AGSSAAIVYL AHNGNQDANW LAICQQFGDF CQRASGAVVA AFVTVVLLIL
201: MVVISASALR RH
001: MKSDSIAVDV PAESSSVIKG KAPLLGLARD HTGSGGYKRG LSIFDFLLRL AAIVAALAAA ATMGTSDETL PFFTQFLQFE ASYDDLPTFQ FFVVAIAIVA
101: GYLVLSLPFS VVTIVRPLAV APRLLLLVLD TAALALDTAA ASAAAAIVYL AHNGNTNTNW LPICQQFGDF CQKTSGAVVS AFASVTFLAI LVVISGVSLK
201: RP
101: GYLVLSLPFS VVTIVRPLAV APRLLLLVLD TAALALDTAA ASAAAAIVYL AHNGNTNTNW LPICQQFGDF CQKTSGAVVS AFASVTFLAI LVVISGVSLK
201: RP
Arabidopsis Description
CASP4CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UFD9]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.