Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- plasma membrane 4
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083250.1.1 | Tomato | plasma membrane | 88.21 | 88.21 |
| PGSC0003DMT400022852 | Potato | plasma membrane | 68.87 | 67.91 |
| PGSC0003DMT400015067 | Potato | plasma membrane | 53.3 | 53.55 |
| PGSC0003DMT400064736 | Potato | plasma membrane | 42.92 | 48.4 |
| PGSC0003DMT400003379 | Potato | cytosol, plasma membrane, vacuole | 40.09 | 47.49 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 1.89 | 2.17 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 1.89 | 2.16 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072599 | EnsemblPlantsGene:PGSC0003DMG400028249 | EntrezGene:102605566 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| PFAM:PF04535 | PGSC:PGSC0003DMG400028249 | RefSeq:XP_006339139.1 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI0002960B72 | UniProt:M1CQM4 | MapMan:35.1 | : | : | : |
Description
UPF0497 membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028249]
Coordinates
chr10:+:55884010..55885644
Molecular Weight (calculated)
22429.6 Da
IEP (calculated)
7.560
GRAVY (calculated)
0.759
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSESTKID VVETNREKKG KAPLLGTAAP AIVAAVGHDG HAKGGGAKRG IAIFDLILRI AAFASALGAT VAMATTEETL PFFTQFFQFE ASYDDLPAFT
101: FFVVGMGIVV AYLVLSVPFS IVCIVRPHAV VPRLLLIIFD TVIIALATGA AGSSTAIVYL AHNGNQDANW LAICQQFGDF CQRASGAVVA SFVTVVLLIL
201: MVVLSAFALR RH
101: FFVVGMGIVV AYLVLSVPFS IVCIVRPHAV VPRLLLIIFD TVIIALATGA AGSSTAIVYL AHNGNQDANW LAICQQFGDF CQRASGAVVA SFVTVVLLIL
201: MVVLSAFALR RH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.