Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022852 | Potato | plasma membrane | 94.42 | 94.42 |
| Solyc10g083250.1.1 | Tomato | plasma membrane | 66.05 | 66.98 |
| Solyc06g074230.2.1 | Tomato | cytosol, plasma membrane, plastid, vacuole | 50.7 | 51.9 |
| Solyc02g067190.2.1 | Tomato | extracellular, plasma membrane | 39.53 | 48.3 |
| Solyc02g088160.2.1 | Tomato | cytosol | 23.72 | 22.27 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 1.86 | 2.17 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 1.86 | 2.16 |
Protein Annotations
| EnsemblPlants:Solyc09g010200.2.1 | EnsemblPlantsGene:Solyc09g010200.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051536 | InterPro:CASP/CASPL | InterPro:CASP_dom |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 | PFAM:PF04535 | SEG:seg | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI000276CAF2 | UniProt:K4CR48 | MapMan:35.1 | : | : | : |
Description
CASP-like protein [Source:UniProtKB/TrEMBL;Acc:K4CR48]
Coordinates
chr9:-:3587567..3589661
Molecular Weight (calculated)
22959.2 Da
IEP (calculated)
8.043
GRAVY (calculated)
0.683
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSESTKIE MGESSKLERK LGKAPLLGSP SNAISSSDPK VATNKKVGNY KKGISIFDLI LRIASVATSI GAAVGMATAG ETLPFFTQFF QFEAGYDDLP
101: TFTFFVIAMS IVVAYLVLSI PFSIVCIARS YVVVPRLLLI IFDTAMITLT TSAAGASAAI VYLAHNGNED ANWLAFCNQF GDFCQTTSAA VVAAFITIVI
201: LLILIVLSAI ALKRH
101: TFTFFVIAMS IVVAYLVLSI PFSIVCIARS YVVVPRLLLI IFDTAMITLT TSAAGASAAI VYLAHNGNED ANWLAFCNQF GDFCQTTSAA VVAAFITIVI
201: LLILIVLSAI ALKRH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.