Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 87.25 | 87.25 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 87.25 | 87.25 |
| Bra001409.1-P | Field mustard | cytosol, plasma membrane, vacuole | 86.76 | 86.76 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 85.29 | 85.29 |
| Bra041024.1-P | Field mustard | cytosol, plasma membrane, vacuole | 84.8 | 84.8 |
| Bra034831.1-P | Field mustard | cytosol, plasma membrane, vacuole | 81.37 | 82.59 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 77.94 | 78.71 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 76.47 | 77.61 |
| KRH72258 | Soybean | plasma membrane | 61.76 | 64.95 |
| KRH32784 | Soybean | plasma membrane | 59.8 | 62.56 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 58.82 | 61.86 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 60.29 | 61.5 |
| KRH72260 | Soybean | plasma membrane | 58.33 | 61.34 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 56.86 | 59.49 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 59.8 | 59.22 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 56.86 | 59.18 |
| CDY00740 | Canola | plasma membrane | 47.06 | 58.9 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 55.39 | 56.5 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 50.0 | 46.15 |
| AT5G15290.1 | Thale cress | cytosol, plasma membrane, vacuole | 38.73 | 42.25 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.45 | 2.7 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 2.45 | 2.7 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 2.45 | 2.39 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 1.96 | 2.17 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 1.96 | 2.17 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820328 | UniProt:A0A178VDH7 | ProteinID:AAG51441.1 | ProteinID:AEE75062.1 | ArrayExpress:AT3G11550 |
| EnsemblPlantsGene:AT3G11550 | RefSeq:AT3G11550 | TAIR:AT3G11550 | RefSeq:AT3G11550-TAIR-G | EnsemblPlants:AT3G11550.1 | TAIR:AT3G11550.1 |
| EMBL:BT010843 | EMBL:BT012612 | InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007043 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030312 |
| GO:GO:0042545 | GO:GO:0042803 | GO:GO:0048226 | GO:GO:0051536 | GO:GO:0071555 | RefSeq:NP_187762.1 |
| ProteinID:OAP02993.1 | PFAM:PF04535 | PO:PO:0009005 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 | UniProt:Q9CAX3 |
| TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000009DF72 | SEG:seg | : | : |
Description
CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
Coordinates
chr3:+:3638178..3639348
Molecular Weight (calculated)
21483.1 Da
IEP (calculated)
6.778
GRAVY (calculated)
0.675
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.