Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36100.1 | KRH09922 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | KRH23409 | AT3G16310.1 | 21798944 |
| AT2G36100.1 | KRH56393 | AT4G26455.1 | 21798944 |
| AT2G36100.1 | KRH62532 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72258 | Soybean | plasma membrane | 79.0 | 81.44 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 80.5 | 80.5 |
| KRH72260 | Soybean | plasma membrane | 76.5 | 78.87 |
| KRH32784 | Soybean | plasma membrane | 76.5 | 78.46 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 75.5 | 77.84 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 73.0 | 74.87 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 73.0 | 74.49 |
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 61.5 | 60.29 |
| CDY43748 | Canola | cytosol, plasma membrane, vacuole | 59.5 | 58.91 |
| CDY08514 | Canola | cytosol, plasma membrane, vacuole | 59.0 | 58.71 |
| Bra017259.1-P | Field mustard | plasma membrane | 59.0 | 58.42 |
| CDX75071 | Canola | cytosol, plasma membrane, vacuole | 60.0 | 58.25 |
| Bra034831.1-P | Field mustard | cytosol, plasma membrane, vacuole | 58.0 | 57.71 |
| CDX75070 | Canola | plasma membrane | 59.5 | 57.49 |
| CDY01034 | Canola | cytosol, plasma membrane, vacuole | 58.5 | 57.35 |
| CDX84158 | Canola | cytosol, plasma membrane, vacuole | 59.0 | 57.28 |
| CDY62471 | Canola | cytosol, plasma membrane, vacuole | 58.0 | 56.86 |
| CDX79653 | Canola | cytosol, plasma membrane, vacuole | 58.5 | 56.8 |
| CDX84579 | Canola | cytosol, plasma membrane, vacuole | 58.5 | 56.8 |
| Bra023049.1-P | Field mustard | cytosol, plasma membrane, vacuole | 58.5 | 56.8 |
| Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 46.5 | 56.71 |
| AT5G06200.1 | Thale cress | cytosol, plasma membrane, vacuole | 57.0 | 56.44 |
| Bra041024.1-P | Field mustard | cytosol, plasma membrane, vacuole | 57.5 | 56.37 |
| CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.5 | 56.37 |
| CDX84159 | Canola | plasma membrane | 58.0 | 56.04 |
| Bra001409.1-P | Field mustard | cytosol, plasma membrane, vacuole | 57.0 | 55.88 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 56.5 | 54.85 |
| CDY43749 | Canola | plasma membrane | 47.5 | 52.49 |
| Bra017260.1-P | Field mustard | plasma membrane | 47.5 | 52.49 |
| KRH26660 | Soybean | cytosol, plasma membrane, plastid | 57.0 | 52.29 |
| KRH22659 | Soybean | cytosol, peroxisome, plasma membrane | 57.0 | 52.29 |
| KRH74902 | Soybean | endoplasmic reticulum, extracellular | 16.5 | 47.14 |
| KRH70770 | Soybean | plasma membrane | 43.0 | 46.24 |
| CDY00740 | Canola | plasma membrane | 37.5 | 46.01 |
| KRG94419 | Soybean | cytosol, peroxisome, plasma membrane | 46.5 | 43.06 |
| KRG89581 | Soybean | plasma membrane | 39.0 | 41.94 |
| KRG89579 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 38.5 | 41.4 |
| KRH74901 | Soybean | cytosol, plasma membrane, vacuole | 18.0 | 39.56 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 2.0 | 2.17 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 2.0 | 2.17 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.0 | 2.16 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 2.0 | 2.16 |
Protein Annotations
| MapMan:35.1 | EMBL:ACUP02001196 | InterPro:CASP/CASPL | InterPro:CASP_dom | EnsemblPlantsGene:GLYMA_02G200900 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0051536 | GO:GO:0071555 | UniProt:I1JGL4 |
| EnsemblPlants:KRH72256 | ProteinID:KRH72256 | ProteinID:KRH72256.1 | PFAM:PF04535 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 |
| TIGRFAMs:TIGR01569 | TMHMM:TMhelix | UniParc:UPI000233745D | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:-:38467315..38469531
Molecular Weight (calculated)
21287.0 Da
IEP (calculated)
6.232
GRAVY (calculated)
0.758
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTIDVPAE SSKINSIANG IRKVPGAPPR PEGGWKKGVA ILDFILRLGA IASALGAAAT MATSDETLPF FTQFFQFEAS YDSFSTFQFF VIAMAFVGGY
101: LVLSLPFSIV TIIRPHAAGP RLFLIILDTV FLTLATSSAA AATAIVYLAH NGNQDSNWLA ICNQFGDFCQ EISGAVVASF VAVVLFVLLI VMCAVALRNH
101: LVLSLPFSIV TIIRPHAAGP RLFLIILDTV FLTLATSSAA AATAIVYLAH NGNQDSNWLA ICNQFGDFCQ EISGAVVASF VAVVLFVLLI VMCAVALRNH
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
Arabidopsis Description
CASP1Casparian strip membrane protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH4]
SUBAcon: [plasma membrane,vacuole,cytosol]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.