CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89579	Soybean	endoplasmic reticulum, plasma membrane, vacuole	97.31	97.31
KRH70770	Soybean	plasma membrane	66.67	66.67
KRH74901	Soybean	cytosol, plasma membrane, vacuole	31.72	64.84
KRH74902	Soybean	endoplasmic reticulum, extracellular	23.66	62.86
PGSC0003DMT400064736	Potato	plasma membrane	58.6	57.98
Solyc02g067190.2.1	Tomato	extracellular, plasma membrane	52.69	55.68
PGSC0003DMT400003379	Potato	cytosol, plasma membrane, vacuole	51.61	53.63
KRH72259	Soybean	cytosol, plasma membrane, vacuole	45.7	43.59
KRH32783	Soybean	cytosol, plasma membrane, vacuole	43.55	41.33
KRH72258	Soybean	plasma membrane	42.47	40.72
KRH72260	Soybean	plasma membrane	41.94	40.21
KRH32784	Soybean	plasma membrane	41.4	39.49
KRH32782	Soybean	cytosol, plasma membrane, vacuole	40.86	39.18
KRH72256	Soybean	cytosol, plasma membrane, vacuole	41.94	39.0
KRH32785	Soybean	cytosol, plasma membrane, vacuole	41.4	38.5
KRH22659	Soybean	cytosol, peroxisome, plasma membrane	39.78	33.95
KRH26660	Soybean	cytosol, plasma membrane, plastid	38.71	33.03
KRG94419	Soybean	cytosol, peroxisome, plasma membrane	37.63	32.41
Solyc02g088160.2.1	Tomato	cytosol	29.57	24.02
Os02t0578366-00	Rice	plasma membrane	8.6	7.96
CDY33770	Canola	plasma membrane	1.08	1.03
Bra026853.1-P	Field mustard	plasma membrane	1.08	1.03
AT1G14160.1	Thale cress	peroxisome, plasma membrane, vacuole	1.08	0.96

Protein Annotations

EntrezGene:100527420	MapMan:35.1	UniProt:A0A0R0E668	EMBL:BT092261	UniProt:C6T4A0	InterPro:CASP/CASPL
InterPro:CASP_dom	EnsemblPlantsGene:GLYMA_20G033800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0051536	GO:GO:0071555	EnsemblPlants:KRG89581	ProteinID:KRG89581	ProteinID:KRG89581.1	PFAM:PF04535
PANTHER:PTHR11615	PANTHER:PTHR11615:SF81	TIGRFAMs:TIGR01569	TMHMM:TMhelix	UniParc:UPI0001B158CC	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:4593236..4595376

Molecular Weight (calculated)

20173.0 Da

IEP (calculated)

10.345

GRAVY (calculated)

0.728

Length

186 amino acids

Sequence
(BLAST)

001: MKAGAVESGE ISKGAPPRKG LIRGLSIMDF ILRIVAAIAT LGSALGMGTT RQTLPFSTQF VKFRAVFSDV PTFVFFVTSN SIVCGYLVLS LVLSFFHIVR
101: SAAVKSRVLQ VFLDTVMYGL LTTGASAATA IVYEAHYGNS NTNWFPFCRQ YNHFCKQISG SLIGSFIAVV LFIILILMSA ISISKH

Best Arabidopsis Sequence Match ( AT5G15290.1 )
(BLAST)

001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH

Arabidopsis Description

CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.