CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane, vacuole
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001409.1-P	Field mustard	cytosol, plasma membrane, vacuole	99.51	99.51
CDY62471	Canola	cytosol, plasma membrane, vacuole	92.65	92.65
CDY01034	Canola	cytosol, plasma membrane, vacuole	90.69	90.69
AT3G11550.1	Thale cress	cytosol, plasma membrane, vacuole	87.25	87.25
CDY08514	Canola	cytosol, plasma membrane, vacuole	79.41	80.6
CDY00740	Canola	plasma membrane	52.94	66.26
CDX84579	Canola	cytosol, plasma membrane, vacuole	60.78	60.19
KRH72258	Soybean	plasma membrane	56.86	59.79
CDX79653	Canola	cytosol, plasma membrane, vacuole	60.29	59.71
CDY43748	Canola	cytosol, plasma membrane, vacuole	58.82	59.41
CDX75071	Canola	cytosol, plasma membrane, vacuole	59.8	59.22
CDX84158	Canola	cytosol, plasma membrane, vacuole	59.8	59.22
CDX75070	Canola	plasma membrane	59.8	58.94
KRH32782	Soybean	cytosol, plasma membrane, vacuole	54.9	57.73
KRH72256	Soybean	cytosol, plasma membrane, vacuole	56.37	57.5
CDX84159	Canola	plasma membrane	58.33	57.49
KRH72259	Soybean	cytosol, plasma membrane, vacuole	54.9	57.44
KRH32784	Soybean	plasma membrane	54.9	57.44
KRH72260	Soybean	plasma membrane	53.92	56.7
KRH32783	Soybean	cytosol, plasma membrane, vacuole	53.43	55.61
KRH32785	Soybean	cytosol, plasma membrane, vacuole	52.94	54.0
CDY69259	Canola	extracellular, plasma membrane	22.55	52.87
CDY43749	Canola	plasma membrane	46.57	52.49
CDY11718	Canola	plasma membrane	23.53	48.0
CDY30551	Canola	plasma membrane	51.47	47.51
CDX77114	Canola	plasma membrane	51.47	47.51
CDX83261	Canola	plasma membrane	50.0	46.15
CDY31172	Canola	plasma membrane	49.51	45.7
CDX69534	Canola	cytosol, plasma membrane, vacuole	41.18	44.92
CDX78624	Canola	cytosol, plasma membrane, vacuole	40.69	44.38
CDX70605	Canola	cytosol, plasma membrane, vacuole	40.2	43.85
PGSC0003DMT400047376	Potato	cytosol, plasma membrane, vacuole	2.45	2.7
Solyc05g007790.2.1	Tomato	plasma membrane	2.45	2.7
PGSC0003DMT400007419	Potato	cytosol, plasma membrane, vacuole	1.96	2.17
Solyc04g005620.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	1.96	2.17
CDY33770	Canola	plasma membrane	1.96	2.05

Protein Annotations

EnsemblPlants:CDX73869	EnsemblPlantsGene:GSBRNA2T00111582001	GO:A0A078CCD2	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF116	PFAM:PF04535	ProteinID:CDX73869	ProteinID:CDX73869.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EDE3A5	MapMan:35.1	:	:	:

Description

BnaA03g31780D

Coordinates

chrLK031800:-:317485..318606

Molecular Weight (calculated)

21622.4 Da

IEP (calculated)

8.215

GRAVY (calculated)

0.662

Length

204 amino acids

Sequence
(BLAST)

001: MKNESTVINV PAESSSAMKG KAPLIGVAKD HTTSGSGGYK RGLSIFDFLL RLAAIIAASV AAGTMFTSDE TLPFFTQFLQ FEAGYDDLPT YQFFVIAMSI
101: VSGYLLLSLP ISVVTIVRPL ATAPRLLLLV LDTAALAFNM AAASSAAAIS YLAHNGNQNT NWLPICQQFG DFCLKSSGAV VSSFVAVVFF TILVVLSGVA
201: LKRH

Best Arabidopsis Sequence Match ( AT3G11550.1 )
(BLAST)

001: MKNESTFIDV PAESSSAMKG KAPLIGVARD HTTSGSGGYN RGLAIFDFLL RLAAIVAALA AAATMGTSDE TLPFFTQFLQ FEASYDDLPT FQFFVIAMAL
101: VGGYLVLSLP ISVVTILRPL ATAPRLLLLV LDTGVLALNT AAASSAAAIS YLAHSGNQNT NWLPICQQFG DFCQKSSGAV VSAFVSVVFF TILVVISGVA
201: LKRH

Arabidopsis Description

CASP2Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAX3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.