CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006295.1-P	Field mustard	cytosol, plasma membrane, vacuole	97.86	97.86
CDX70605	Canola	cytosol, plasma membrane, vacuole	95.72	95.72
AT5G15290.1	Thale cress	cytosol, plasma membrane, vacuole	83.42	83.42
CDY69259	Canola	extracellular, plasma membrane	37.97	81.61
CDX69534	Canola	cytosol, plasma membrane, vacuole	77.54	77.54
CDY11718	Canola	plasma membrane	39.57	74.0
CDY43748	Canola	cytosol, plasma membrane, vacuole	44.38	41.09
CDX84159	Canola	plasma membrane	45.45	41.06
CDY08514	Canola	cytosol, plasma membrane, vacuole	43.85	40.8
CDX75071	Canola	cytosol, plasma membrane, vacuole	44.92	40.78
CDX73869	Canola	endoplasmic reticulum, plasma membrane, vacuole	44.38	40.69
CDY62471	Canola	cytosol, plasma membrane, vacuole	43.85	40.2
CDX79653	Canola	cytosol, plasma membrane, vacuole	43.85	39.81
CDX84579	Canola	cytosol, plasma membrane, vacuole	43.85	39.81
CDX84158	Canola	cytosol, plasma membrane, vacuole	43.32	39.32
CDY01034	Canola	cytosol, plasma membrane, vacuole	42.78	39.22
CDX75070	Canola	plasma membrane	43.32	39.13
CDY30551	Canola	plasma membrane	45.45	38.46
CDX83261	Canola	plasma membrane	45.45	38.46
CDX77114	Canola	plasma membrane	45.45	38.46
CDY31172	Canola	plasma membrane	44.92	38.01
CDY43749	Canola	plasma membrane	34.76	35.91
CDY00740	Canola	plasma membrane	31.02	35.58
CDY33770	Canola	plasma membrane	1.6	1.54

Protein Annotations

EnsemblPlants:CDX78624	EnsemblPlantsGene:GSBRNA2T00130038001	GO:A0A078CRE7	InterPro:CASP/CASPL	InterPro:CASP_dom	PANTHER:PTHR11615
PANTHER:PTHR11615:SF81	PFAM:PF04535	ProteinID:CDX78624	ProteinID:CDX78624.1	SEG:seg	TIGRFAMs:TIGR01569
TMHMM:TMhelix	UniParc:UPI0004EE6079	MapMan:35.1	:	:	:

Description

BnaA03g05360D

Coordinates

chrLK031815:+:1570596..1571324

Molecular Weight (calculated)

20496.4 Da

IEP (calculated)

10.018

GRAVY (calculated)

0.758

Length

187 amino acids

Sequence
(BLAST)

001: MKSGQAEIAE TSKGIQKRGL MSRRIAIFEF ILRIIAFFNT ISSAILMATT NETLPFFTQF IRFHADYNDL PALTFFVVAN AVVSGYLILT LPLAFVHIVK
101: NKTENSRILL IVLDVAMVGL LASGAASAAA IVYLAHNGNN NTNWFAVCQQ FNSFCERISG SLIGSFIAVV LLILLIILSA IAISRRH

Best Arabidopsis Sequence Match ( AT5G15290.1 )
(BLAST)

001: MKSGQAEIME TSKGIQKSGL MSRRIAILEF ILRIVAFFNT IGSAILMGTT HETLPFFTQF IRFQAEYNDL PALTFFVVAN AVVSGYLILS LTLAFVHIVK
101: RKTQNTRILL IILDVAMLGL LTSGASSAAA IVYLAHNGNN KTNWFAICQQ FNSFCERISG SLIGSFIAIV LLILLILLSA IALSRRH

Arabidopsis Description

CASP5Casparian strip membrane protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXF3]
SUBAcon: [plasma membrane,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.