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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005299.1-P Field mustard peroxisome, plasma membrane, vacuole 76.33 96.34
CDX75071 Canola cytosol, plasma membrane, vacuole 87.44 87.86
CDY43749 Canola plasma membrane 75.36 86.19
CDY43748 Canola cytosol, plasma membrane, vacuole 80.68 82.67
CDX75070 Canola plasma membrane 80.68 80.68
CDX79653 Canola cytosol, plasma membrane, vacuole 79.71 80.1
CDX84579 Canola cytosol, plasma membrane, vacuole 79.71 80.1
CDX84158 Canola cytosol, plasma membrane, vacuole 79.23 79.61
AT2G36100.1 Thale cress cytosol, plasma membrane, vacuole 78.74 79.13
CDY08514 Canola cytosol, plasma membrane, vacuole 62.32 64.18
CDY01034 Canola cytosol, plasma membrane, vacuole 60.39 61.27
CDY62471 Canola cytosol, plasma membrane, vacuole 58.94 59.8
CDX73869 Canola endoplasmic reticulum, plasma membrane, vacuole 57.49 58.33
KRH72256 Soybean cytosol, plasma membrane, vacuole 56.04 58.0
KRH72258 Soybean plasma membrane 54.11 57.73
KRH32782 Soybean cytosol, plasma membrane, vacuole 53.14 56.7
KRH32784 Soybean plasma membrane 53.14 56.41
KRH72260 Soybean plasma membrane 52.17 55.67
KRH32783 Soybean cytosol, plasma membrane, vacuole 52.17 55.1
KRH32785 Soybean cytosol, plasma membrane, vacuole 53.14 55.0
KRH72259 Soybean cytosol, plasma membrane, vacuole 50.72 53.85
CDY00740 Canola plasma membrane 38.16 48.47
CDX78624 Canola cytosol, plasma membrane, vacuole 41.06 45.45
CDY30551 Canola plasma membrane 48.31 45.25
CDX77114 Canola plasma membrane 48.31 45.25
CDX70605 Canola cytosol, plasma membrane, vacuole 40.58 44.92
CDY31172 Canola plasma membrane 46.86 43.89
CDX83261 Canola plasma membrane 46.86 43.89
CDY69259 Canola extracellular, plasma membrane 18.36 43.68
CDX69534 Canola cytosol, plasma membrane, vacuole 38.16 42.25
CDY11718 Canola plasma membrane 18.84 39.0
CDY33770 Canola plasma membrane 2.9 3.08
PGSC0003DMT400047376 Potato cytosol, plasma membrane, vacuole 1.45 1.62
Solyc05g007790.2.1 Tomato plasma membrane 1.45 1.62
PGSC0003DMT400007419 Potato cytosol, plasma membrane, vacuole 0.97 1.09
Solyc04g005620.2.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 0.97 1.09
Protein Annotations
EnsemblPlants:CDX84159EnsemblPlantsGene:GSBRNA2T00141182001GO:A0A078D705InterPro:CASP/CASPLInterPro:CASP_domPANTHER:PTHR11615
PANTHER:PTHR11615:SF116PFAM:PF04535ProteinID:CDX84159ProteinID:CDX84159.1SEG:segTIGRFAMs:TIGR01569
TMHMM:TMhelixUniParc:UPI0004EEFDE2MapMan:35.1:::
Description
BnaC04g09210D
Coordinates
chrLK031836:+:279075..279947
Molecular Weight (calculated)
22123.2 Da
IEP (calculated)
8.213
GRAVY (calculated)
0.796
Length
207 amino acids
Sequence
(BLAST)
001: MAKESTTIEV GEPSTMTKST SHVVVDEKKK KGFVVATAGG GYKRGLAIFD FLLRLAATVT TITASSVMYT AEETLPFFTQ FLQFQAGYDD FATFQFFVIA
101: IAMVASYLVL SLPFSIVTII RPLAAAPRLI LLVSDTVVVT LTTSAAAAAA AIVYLAHNGN PNTNWLPICQ QFGDFCQAVS SAVVAASIAV VFFIVLIVIS
201: AIVLKRH
Best Arabidopsis Sequence Match ( AT2G27370.1 )
(BLAST)
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.