Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G36100.1 | CDX97739 | AT3G16310.1 | 21798944 |
AT2G36100.1 | CDY30157 | AT3G16310.1 | 21798944 |
AT2G36100.1 | CDX89333 | AT4G26455.1 | 21798944 |
AT2G36100.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra005299.1-P | Field mustard | peroxisome, plasma membrane, vacuole | 76.33 | 96.34 |
CDX75071 | Canola | cytosol, plasma membrane, vacuole | 87.44 | 87.86 |
CDY43749 | Canola | plasma membrane | 75.36 | 86.19 |
CDY43748 | Canola | cytosol, plasma membrane, vacuole | 80.68 | 82.67 |
CDX75070 | Canola | plasma membrane | 80.68 | 80.68 |
CDX79653 | Canola | cytosol, plasma membrane, vacuole | 79.71 | 80.1 |
CDX84579 | Canola | cytosol, plasma membrane, vacuole | 79.71 | 80.1 |
CDX84158 | Canola | cytosol, plasma membrane, vacuole | 79.23 | 79.61 |
AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 78.74 | 79.13 |
CDY08514 | Canola | cytosol, plasma membrane, vacuole | 62.32 | 64.18 |
CDY01034 | Canola | cytosol, plasma membrane, vacuole | 60.39 | 61.27 |
CDY62471 | Canola | cytosol, plasma membrane, vacuole | 58.94 | 59.8 |
CDX73869 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 57.49 | 58.33 |
KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 56.04 | 58.0 |
KRH72258 | Soybean | plasma membrane | 54.11 | 57.73 |
KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 53.14 | 56.7 |
KRH32784 | Soybean | plasma membrane | 53.14 | 56.41 |
KRH72260 | Soybean | plasma membrane | 52.17 | 55.67 |
KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 52.17 | 55.1 |
KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 53.14 | 55.0 |
KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 50.72 | 53.85 |
CDY00740 | Canola | plasma membrane | 38.16 | 48.47 |
CDX78624 | Canola | cytosol, plasma membrane, vacuole | 41.06 | 45.45 |
CDY30551 | Canola | plasma membrane | 48.31 | 45.25 |
CDX77114 | Canola | plasma membrane | 48.31 | 45.25 |
CDX70605 | Canola | cytosol, plasma membrane, vacuole | 40.58 | 44.92 |
CDY31172 | Canola | plasma membrane | 46.86 | 43.89 |
CDX83261 | Canola | plasma membrane | 46.86 | 43.89 |
CDY69259 | Canola | extracellular, plasma membrane | 18.36 | 43.68 |
CDX69534 | Canola | cytosol, plasma membrane, vacuole | 38.16 | 42.25 |
CDY11718 | Canola | plasma membrane | 18.84 | 39.0 |
CDY33770 | Canola | plasma membrane | 2.9 | 3.08 |
PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 1.45 | 1.62 |
Solyc05g007790.2.1 | Tomato | plasma membrane | 1.45 | 1.62 |
PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 0.97 | 1.09 |
Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 0.97 | 1.09 |
Protein Annotations
EnsemblPlants:CDX84159 | EnsemblPlantsGene:GSBRNA2T00141182001 | GO:A0A078D705 | InterPro:CASP/CASPL | InterPro:CASP_dom | PANTHER:PTHR11615 |
PANTHER:PTHR11615:SF116 | PFAM:PF04535 | ProteinID:CDX84159 | ProteinID:CDX84159.1 | SEG:seg | TIGRFAMs:TIGR01569 |
TMHMM:TMhelix | UniParc:UPI0004EEFDE2 | MapMan:35.1 | : | : | : |
Description
BnaC04g09210D
Coordinates
chrLK031836:+:279075..279947
Molecular Weight (calculated)
22123.2 Da
IEP (calculated)
8.213
GRAVY (calculated)
0.796
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKESTTIEV GEPSTMTKST SHVVVDEKKK KGFVVATAGG GYKRGLAIFD FLLRLAATVT TITASSVMYT AEETLPFFTQ FLQFQAGYDD FATFQFFVIA
101: IAMVASYLVL SLPFSIVTII RPLAAAPRLI LLVSDTVVVT LTTSAAAAAA AIVYLAHNGN PNTNWLPICQ QFGDFCQAVS SAVVAASIAV VFFIVLIVIS
201: AIVLKRH
101: IAMVASYLVL SLPFSIVTII RPLAAAPRLI LLVSDTVVVT LTTSAAAAAA AIVYLAHNGN PNTNWLPICQ QFGDFCQAVS SAVVAASIAV VFFIVLIVIS
201: AIVLKRH
001: MDIEKAGSRR EEEEPIVQRP KLDKGKGKAH VFAPPMNYNR IMDKHKQEKM SPAGWKRGVA IFDFVLRLIA AITAMAAAAK MATTEETLPF FTQFLQFQAD
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
101: YTDLPTMSSF VIVNSIVGGY LTLSLPFSIV CILRPLAVPP RLFLILCDTV MMGLTLMAAS ASAAIVYLAH NGNSSSNWLP VCQQFGDFCQ GTSGAVVASF
201: IAATLLMFLV ILSAFALKRT T
Arabidopsis Description
CASP3Casparian strip membrane protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQI2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.