Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G11550.1 | Thale cress | cytosol, plasma membrane, vacuole | 78.71 | 77.94 |
| KRH72258 | Soybean | plasma membrane | 59.41 | 61.86 |
| KRH32784 | Soybean | plasma membrane | 57.92 | 60.0 |
| KRH72260 | Soybean | plasma membrane | 57.43 | 59.79 |
| KRH32782 | Soybean | cytosol, plasma membrane, vacuole | 56.93 | 59.28 |
| KRH32783 | Soybean | cytosol, plasma membrane, vacuole | 56.44 | 58.16 |
| KRH72259 | Soybean | cytosol, plasma membrane, vacuole | 55.94 | 57.95 |
| AT2G36100.1 | Thale cress | cytosol, plasma membrane, vacuole | 58.91 | 57.77 |
| KRH72256 | Soybean | cytosol, plasma membrane, vacuole | 56.44 | 57.0 |
| KRH32785 | Soybean | cytosol, plasma membrane, vacuole | 52.48 | 53.0 |
| AT2G27370.1 | Thale cress | cytosol, peroxisome, plasma membrane | 52.97 | 48.42 |
| AT5G15290.1 | Thale cress | cytosol, plasma membrane, vacuole | 40.1 | 43.32 |
| PGSC0003DMT400047376 | Potato | cytosol, plasma membrane, vacuole | 2.48 | 2.7 |
| Solyc05g007790.2.1 | Tomato | plasma membrane | 2.48 | 2.7 |
| AT1G14160.1 | Thale cress | peroxisome, plasma membrane, vacuole | 2.48 | 2.39 |
| PGSC0003DMT400007419 | Potato | cytosol, plasma membrane, vacuole | 1.98 | 2.17 |
| Solyc04g005620.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 1.98 | 2.17 |
Protein Annotations
| MapMan:35.1 | EntrezGene:830507 | UniProt:A0A178UFD9 | ProteinID:AED90983.1 | ArrayExpress:AT5G06200 | EnsemblPlantsGene:AT5G06200 |
| RefSeq:AT5G06200 | TAIR:AT5G06200 | RefSeq:AT5G06200-TAIR-G | EnsemblPlants:AT5G06200.1 | TAIR:AT5G06200.1 | ProteinID:BAB09685.1 |
| InterPro:CASP/CASPL | InterPro:CASP_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0007043 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0030312 | GO:GO:0042545 | GO:GO:0042803 |
| GO:GO:0048226 | GO:GO:0051536 | GO:GO:0071555 | RefSeq:NP_196238.1 | ProteinID:OAO92350.1 | PFAM:PF04535 |
| PO:PO:0009005 | PANTHER:PTHR11615 | PANTHER:PTHR11615:SF116 | UniProt:Q9FFZ7 | TIGRFAMs:TIGR01569 | TMHMM:TMhelix |
| UniParc:UPI00000A44CF | SEG:seg | : | : | : | : |
Description
CASP4CASP-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UFD9]
Coordinates
chr5:+:1877134..1878324
Molecular Weight (calculated)
21112.8 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.783
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSDSIAVDV PAESSSVIKG KAPLLGLARD HTGSGGYKRG LSIFDFLLRL AAIVAALAAA ATMGTSDETL PFFTQFLQFE ASYDDLPTFQ FFVVAIAIVA
101: GYLVLSLPFS VVTIVRPLAV APRLLLLVLD TAALALDTAA ASAAAAIVYL AHNGNTNTNW LPICQQFGDF CQKTSGAVVS AFASVTFLAI LVVISGVSLK
201: RP
101: GYLVLSLPFS VVTIVRPLAV APRLLLLVLD TAALALDTAA ASAAAAIVYL AHNGNTNTNW LPICQQFGDF CQKTSGAVVS AFASVTFLAI LVVISGVSLK
201: RP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.