Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G009800.1 | Wheat | cytosol | 59.84 | 59.38 |
| TraesCS2B01G101500.1 | Wheat | cytosol | 59.84 | 59.38 |
| VIT_11s0016g03470.t01 | Wine grape | extracellular | 62.99 | 58.82 |
| TraesCS2A01G009000.1 | Wheat | cytosol | 59.06 | 58.59 |
| TraesCS1B01G094400.1 | Wheat | cytosol | 59.06 | 58.59 |
| TraesCS1D01G078300.1 | Wheat | cytosol | 58.27 | 57.81 |
| Zm00001d004482_P001 | Maize | cytosol, extracellular, mitochondrion, vacuole | 55.91 | 55.91 |
| PGSC0003DMT400061606 | Potato | extracellular, nucleus, plasma membrane | 57.48 | 55.3 |
| TraesCS1A01G075900.1 | Wheat | mitochondrion | 59.84 | 55.07 |
| Os05t0188300-01 | Rice | cytosol, extracellular, vacuole | 55.91 | 54.2 |
| Solyc11g006870.1.1 | Tomato | plasma membrane | 55.12 | 53.03 |
| EES11767 | Sorghum | plastid | 53.54 | 52.71 |
| Bra020049.1-P | Field mustard | golgi, plasma membrane, vacuole | 59.06 | 52.45 |
| CDY42278 | Canola | extracellular, plasma membrane, vacuole | 56.69 | 52.17 |
| CDY44927 | Canola | golgi, plasma membrane, vacuole | 58.27 | 51.75 |
| AT5G19570.1 | Thale cress | cytosol, peroxisome, plasma membrane | 53.54 | 49.63 |
| KRH41529 | Soybean | endoplasmic reticulum, golgi, mitochondrion | 52.76 | 48.2 |
| KRH60241 | Soybean | cytosol, extracellular, plasma membrane | 53.54 | 34.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P09220_001 | EnsemblPlants:GSMUA_Achr2T09220_001 | EnsemblPlantsGene:GSMUA_Achr2G09220_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM234 | PANTHER:PTHR28668 | PFAM:PF10639 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002954DF7 |
| UniProt:M0S6G3 | MapMan:35.2 | : | : | : | : |
Description
Putative UPF0546 membrane protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G09220_001]
Coordinates
chr2:-:12938642..12940645
Molecular Weight (calculated)
13956.3 Da
IEP (calculated)
12.095
GRAVY (calculated)
0.379
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDVEKMIA VGIVWGATNA VMRRGALVWD RKLQLRSRTP GHRPRGRLLG HVLRWIDLLL TWQYSVPFLI NLSASAAFFH MLGGAPISVA VPVTNATTFA
101: ATAVAAMILR EEMRVGLTFF GHSQTQI
101: ATAVAAMILR EEMRVGLTFF GHSQTQI
001: MKEDMDKMVA VGLVWGATNA LIRRGALAWD KTKSSSTTES HSPPLQIRRK IMIALRDWIN LLLFWQYSIP FLINLSASAT FFALLSHAPI SLAVPVTNAT
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
101: TFAATAAFGI LLGEETQIGL ALLGTSFIVF GIWLCVL
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q94AU5]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.