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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15932 Canola golgi, nucleus, plasma membrane 79.84 84.02
Bra030337.1-P Field mustard golgi, nucleus, plasma membrane 79.84 84.02
CDY15931 Canola extracellular, mitochondrion, plasma membrane, vacuole 20.42 82.11
Bra030336.1-P Field mustard extracellular, mitochondrion, plasma membrane, vacuole 20.42 82.11
CDX99640 Canola golgi, plasma membrane, vacuole 72.77 80.81
CDY11677 Canola golgi, nucleus, plasma membrane 78.27 80.38
AT5G40230.1 Thale cress plasma membrane 73.3 75.68
AT4G15540.1 Thale cress plasma membrane 65.71 72.33
CDX99639 Canola plasma membrane 31.68 60.2
KRH46524 Soybean plasma membrane 50.26 52.32
VIT_14s0066g01640.t01 Wine grape plasma membrane 48.43 51.53
AT3G28050.1 Thale cress plasma membrane 45.29 47.14
AT3G28130.2 Thale cress plasma membrane 42.15 45.35
AT5G40210.1 Thale cress plasma membrane 39.79 44.84
AT3G28100.1 Thale cress plasma membrane 40.31 43.63
AT3G28070.1 Thale cress golgi, plasma membrane, plastid, vacuole 40.05 42.5
AT3G28080.1 Thale cress golgi, plasma membrane, vacuole 39.53 42.18
AT3G28060.1 Thale cress endoplasmic reticulum, mitochondrion, plasma membrane, plastid 14.4 35.48
AT1G70260.1 Thale cress plasma membrane 29.84 30.4
AT1G60050.1 Thale cress plasma membrane 29.58 30.21
Protein Annotations
MapMan:24.2.1.5EntrezGene:834022ProteinID:AED94524.1ArrayExpress:AT5G40240EnsemblPlantsGene:AT5G40240RefSeq:AT5G40240
TAIR:AT5G40240RefSeq:AT5G40240-TAIR-GEnsemblPlants:AT5G40240.2TAIR:AT5G40240.2InterPro:EamA_domUniProt:F4KHA9
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021GO:GO:0022857GO:GO:0055085RefSeq:NP_001190441.1PFAM:PF00892PO:PO:0000293
PANTHER:PTHR31218PANTHER:PTHR31218:SF48SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0001E9316AInterPro:WAT1-related
Description
WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:F4KHA9]
Coordinates
chr5:-:16082125..16084957
Molecular Weight (calculated)
41782.8 Da
IEP (calculated)
8.866
GRAVY (calculated)
0.800
Length
382 amino acids
Sequence
(BLAST)
001: MFKCKLENFS NWMIGVDEGE EKVAWKYFTR DVVPFAAMFA VECATVGSNT LFKAATLRGL SFYVFVFYSY IVSTLLLLPL SVIFGRSRRL PAAKSPLFFK
101: IFLLGLVGFM SQIAGCKGIA YSSPTLASAI SNLTPAFTFT LAVIFRMEQV RLRSSATQAK IIGAILSISG ALVVVLYKGP QVLASASFTT VLPTVTLHQQ
201: LTSIESSWII GGLLLASQYF LISVWYILQT RVMEVYPEEI TVVFFYNLFA TLISVPVCLF AESNLTSWVL KPDISLAAII YSGVFVSLFS ALTHTWGLHL
301: KGPVYISLFR PLSIAIAVAM GAIFLGDALH LGSVIGSMIL CIGFYTVIWG KAREDTIKTV AGSEQSPLLL THIIEDGAFP LS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.