Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11675 | Canola | golgi, nucleus, plasma membrane | 61.35 | 79.37 |
| AT4G15540.1 | Thale cress | plasma membrane | 71.62 | 76.37 |
| CDY66864 | Canola | golgi, plasma membrane, vacuole | 71.08 | 74.93 |
| AT5G40240.2 | Thale cress | plasma membrane | 75.68 | 73.3 |
| Bra028450.1-P | Field mustard | plasma membrane | 78.92 | 62.53 |
| CDX67447 | Canola | plasma membrane | 78.11 | 61.36 |
| VIT_14s0066g01640.t01 | Wine grape | plasma membrane | 51.08 | 52.65 |
| KRH46524 | Soybean | plasma membrane | 50.54 | 50.95 |
| AT5G40210.1 | Thale cress | plasma membrane | 42.16 | 46.02 |
| AT3G28050.1 | Thale cress | plasma membrane | 45.41 | 45.78 |
| AT3G28130.2 | Thale cress | plasma membrane | 43.51 | 45.35 |
| AT3G28100.1 | Thale cress | plasma membrane | 41.35 | 43.34 |
| AT3G28080.1 | Thale cress | golgi, plasma membrane, vacuole | 41.08 | 42.46 |
| AT3G28070.1 | Thale cress | golgi, plasma membrane, plastid, vacuole | 40.81 | 41.94 |
| AT3G28060.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 13.78 | 32.9 |
| AT1G70260.1 | Thale cress | plasma membrane | 30.27 | 29.87 |
| AT1G60050.1 | Thale cress | plasma membrane | 29.19 | 28.88 |
Protein Annotations
| MapMan:24.2.1.5 | EntrezGene:834021 | ProteinID:AED94522.1 | ArrayExpress:AT5G40230 | EnsemblPlantsGene:AT5G40230 | RefSeq:AT5G40230 |
| TAIR:AT5G40230 | RefSeq:AT5G40230-TAIR-G | EnsemblPlants:AT5G40230.1 | TAIR:AT5G40230.1 | ProteinID:BAB10904.1 | InterPro:EamA_dom |
| UniProt:F4KHA8 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| RefSeq:NP_198839.1 | PFAM:PF00892 | PO:PO:0000293 | PO:PO:0009005 | PO:PO:0009047 | PO:PO:0020100 |
| PANTHER:PTHR31218 | PANTHER:PTHR31218:SF48 | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI00001627DA | InterPro:WAT1-related |
| SEG:seg | : | : | : | : | : |
Description
WAT1-related protein At5g40230 [Source:UniProtKB/Swiss-Prot;Acc:F4KHA8]
Coordinates
chr5:-:16079648..16081893
Molecular Weight (calculated)
39951.5 Da
IEP (calculated)
8.094
GRAVY (calculated)
0.799
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRGAGGETV AWSYFCRDVV PFTAMVAVEC VTVGSNTLFK AATLRGLSFY VFVFYTYVVA TLVLLPLSLI FGRSKRLPSA KTPVFFNIFL LALVGFMSLI
101: VGCKGIEYSS PTLASAISNL TPAFTFTLAV IFRMEQIVLR SSATQAKIIG TIVSISGALV VILYKGPKVL TDASLTPPSP TISLYQHLTS FDSSWIIGGL
201: LLATQYLLVS VWYILQTRVM ELYPEEITVV FLYNLCATLI SAPVCLFAEK DLNSFILKPG VSLASVMYSG GLVSSFGSVI HTWGLHLKGP VYISLFKPLS
301: IVIAVAMGVM FLGDALYLGS VIGSLILSLG FYTVIWGKAR EDSIKTVAGT EQSPLLPSHT IEEEASLSCD
101: VGCKGIEYSS PTLASAISNL TPAFTFTLAV IFRMEQIVLR SSATQAKIIG TIVSISGALV VILYKGPKVL TDASLTPPSP TISLYQHLTS FDSSWIIGGL
201: LLATQYLLVS VWYILQTRVM ELYPEEITVV FLYNLCATLI SAPVCLFAEK DLNSFILKPG VSLASVMYSG GLVSSFGSVI HTWGLHLKGP VYISLFKPLS
301: IVIAVAMGVM FLGDALYLGS VIGSLILSLG FYTVIWGKAR EDSIKTVAGT EQSPLLPSHT IEEEASLSCD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.