CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13500.1	CDX70995	AT5G22290.1	21798944
AT4G13500.1	CDX88803	AT5G22290.1	21798944
AT4G13500.1	CDX92368	AT5G22290.1	21798944
AT4G13500.1	CDY09128	AT5G22290.1	21798944
AT4G13500.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015164.1-P	Field mustard	plastid	96.85	99.19
CDY06375	Canola	plastid	96.06	98.39
CDY30582	Canola	plastid	92.13	94.35
AT2G05310.1	Thale cress	plastid	82.68	84.0
AT4G13500.1	Thale cress	plastid	81.1	82.4
VIT_12s0057g01000.t01	Wine grape	plastid	62.2	66.95
KRH14055	Soybean	plastid	63.78	64.29
KRH74058	Soybean	plastid	62.99	63.49
Solyc05g024430.2.1	Tomato	plastid	56.69	62.61
EER93849	Sorghum	plastid	56.69	62.07
PGSC0003DMT400048484	Potato	plastid	55.12	60.87
Os03t0595300-01	Rice	plastid	55.12	59.32
GSMUA_Achr4P32980_001	Banana	plastid	51.18	57.52
Zm00001d033150_P001	Maize	plastid	55.91	56.8
TraesCS5B01G478600.1	Wheat	mitochondrion, plastid	48.03	50.83
TraesCS5A01G466800.1	Wheat	mitochondrion, plastid	48.03	50.0
TraesCS5D01G479700.1	Wheat	plastid	48.03	49.59
HORVU5Hr1G111330.4	Barley	plastid	47.24	36.59

Protein Annotations

EnsemblPlants:CDY33396	EnsemblPlantsGene:GSBRNA2T00054270001	GO:A0A078H697	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36343	ProteinID:CDY33396	ProteinID:CDY33396.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE57D3
UniProt:A0A078H697	MapMan:35.2	:	:	:	:

Description

BnaA07g04430DBnaA07g04430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H697]

Coordinates

chrLK032313:-:135169..136196

Molecular Weight (calculated)

14012.9 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.250

Length

127 amino acids

Sequence
(BLAST)

001: MLEMAAKLHI PSSFSHKAND STTSSSSSYS SLLALPQFLC TPCSSGFTQF KLHAKLGGGD GEVKPKEKKK FITKEEEPEQ YWQSAGEREG ENPMKTPLPY
101: IIIFGMSTPF VILAIAFANG WIKVPIR

Best Arabidopsis Sequence Match ( AT2G05310.1 )
(BLAST)

001: MAAKLCIPSS SFSHRTNDSI TSSSSSYSSL LALPQFFCPP SPLGFPQFKL HAKLGGGDGE VKPKDKKKFI TKDEEPEQYW QSVGEREGEN PMKTPLPYII
101: IFGMSTPFVI LAIAFANGWI KVPIR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ31]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.